Difference between revisions of "Tiso gene 20549"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** v-type_proton_atpase ** ORF...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE--TRNA-LIGASE-RXN METHIONINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE--TRNA-LIGASE-RXN METHIONINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** v-type_proton_atpase
+
** methionyl-trna_synthetase
−
** ORF
+
−
** vacuolar_h+-_sector_c
+
−
** v-type_proton_atpase_catalytic_subunit_a
+
−
** vacuolar_h+-atpase_v0_subunits_a
+
−
** atp_synthase_gamma_chloroplastic
+
−
** atp_synthase_gamma_subunit
+
−
** atp_synthase_subunit_mitochondrial
+
−
** ycf35
+
−
** atp_synthase_delta_mitochondrial
+
−
** v-type_proton_atpase_subunit_h
+
−
** v-type_protonatpasesubunitd1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.3.14 EC-3.6.3.14]
+
** [http://enzyme.expasy.org/EC/6.1.1.10 EC-6.1.1.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 4 [[PROTON]][e] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[WATER]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[ATP]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[Elongation-tRNAMet]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-MET-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 4 H+[e] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''<=>''' 1 H2O[c] '''+''' 3 H+[c] '''+''' 1 ATP[c]
+
** 1 ATP[c] '''+''' 1 L-methionine[c] '''+''' 1 elongator tRNAmet[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-methionyl-[elongator tRNAmet][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7215]]
+
* Gene: [[Tiso_gene_284]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_18105]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_406]]
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_12618]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6012]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11754]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9460]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11192]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7213]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2798]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11155]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5307]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1366]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6592]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17383]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10981]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15850]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11753]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
Line 125: Line 41:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20852 20852]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13481 13481]
−
{{#set: direction=REVERSIBLE}}
+
* LIGAND-RXN:
−
{{#set: common name=v-type_proton_atpase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03659 R03659]
−
{{#set: common name=ORF}}
+
* UNIPROT:
−
{{#set: common name=vacuolar_h+-_sector_c}}
+
** [http://www.uniprot.org/uniprot/P56127 P56127]
−
{{#set: common name=v-type_proton_atpase_catalytic_subunit_a}}
+
** [http://www.uniprot.org/uniprot/Q44951 Q44951]
−
{{#set: common name=vacuolar_h+-atpase_v0_subunits_a}}
+
** [http://www.uniprot.org/uniprot/P47267 P47267]
−
{{#set: common name=atp_synthase_gamma_chloroplastic}}
+
** [http://www.uniprot.org/uniprot/O84035 O84035]
−
{{#set: common name=atp_synthase_gamma_subunit}}
+
** [http://www.uniprot.org/uniprot/O28819 O28819]
−
{{#set: common name=atp_synthase_subunit_mitochondrial}}
+
** [http://www.uniprot.org/uniprot/O58721 O58721]
−
{{#set: common name=ycf35}}
+
** [http://www.uniprot.org/uniprot/O83776 O83776]
−
{{#set: common name=atp_synthase_delta_mitochondrial}}
+
** [http://www.uniprot.org/uniprot/O33925 O33925]
−
{{#set: common name=v-type_proton_atpase_subunit_h}}
+
** [http://www.uniprot.org/uniprot/Q58659 Q58659]
−
{{#set: common name=v-type_protonatpasesubunitd1}}
+
** [http://www.uniprot.org/uniprot/O66738 O66738]
−
{{#set: ec number=EC-3.6.3.14}}
+
** [http://www.uniprot.org/uniprot/Q9ZCP0 Q9ZCP0]
−
{{#set: gene associated=Tiso_gene_7215|Tiso_gene_18105|Tiso_gene_12618|Tiso_gene_6012|Tiso_gene_11754|Tiso_gene_9460|Tiso_gene_11192|Tiso_gene_7213|Tiso_gene_2798|Tiso_gene_11155|Tiso_gene_5307|Tiso_gene_1366|Tiso_gene_6592|Tiso_gene_17383|Tiso_gene_10981|Tiso_gene_15850|Tiso_gene_1365|Tiso_gene_11753}}
+
** [http://www.uniprot.org/uniprot/Q9PP85 Q9PP85]
−
{{#set: in pathway=PWY-7219}}
+
** [http://www.uniprot.org/uniprot/O26687 O26687]
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
** [http://www.uniprot.org/uniprot/O67298 O67298]
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
** [http://www.uniprot.org/uniprot/Q9JWP0 Q9JWP0]
 +
** [http://www.uniprot.org/uniprot/Q9ZKG9 Q9ZKG9]
 +
** [http://www.uniprot.org/uniprot/Q9Z959 Q9Z959]
 +
** [http://www.uniprot.org/uniprot/Q9CHE0 Q9CHE0]
 +
** [http://www.uniprot.org/uniprot/P43828 P43828]
 +
** [http://www.uniprot.org/uniprot/P56192 P56192]
 +
** [http://www.uniprot.org/uniprot/Q50319 Q50319]
 +
** [http://www.uniprot.org/uniprot/P23920 P23920]
 +
** [http://www.uniprot.org/uniprot/P75091 P75091]
 +
** [http://www.uniprot.org/uniprot/Q55729 Q55729]
 +
** [http://www.uniprot.org/uniprot/P22438 P22438]
 +
** [http://www.uniprot.org/uniprot/P00958 P00958]
 +
** [http://www.uniprot.org/uniprot/P00959 P00959]
 +
** [http://www.uniprot.org/uniprot/Q9M2T9 Q9M2T9]
 +
** [http://www.uniprot.org/uniprot/O23761 O23761]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=methionyl-trna_synthetase}}
 +
{{#set: ec number=EC-6.1.1.10}}
 +
{{#set: gene associated=Tiso_gene_284|Tiso_gene_406}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:06, 21 March 2018

Reaction METHIONINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methionyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-methionine[c] + 1 elongator tRNAmet[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-methionyl-[elongator tRNAmet][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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