Difference between revisions of "N6-L-threonylcarbamoyladenine37-tRNAs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec nu...")
(Created page with "Category:Gene == Gene Tiso_gene_18328 == * right end position: ** 3032 * transcription direction: ** POSITIVE * left end position: ** 487 * centisome position: ** 15.76562...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] ==
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== Gene Tiso_gene_18328 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3032
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.1.1.13 EC-2.1.1.13]
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** 487
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* centisome position:
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** 15.765620   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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** 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 an N5-methyl-tetrahydrofolate[c] '''+''' 1 L-homocysteine[c] '''=>''' 1 L-methionine[c] '''+''' 1 a tetrahydrofolate[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_1602]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[HPPD]]
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* Category: [[manual]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[manual-primary_network]]
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* Reaction: [[RXN-10815]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-1581]]
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* [[PWY-7432]]
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* [[TYRFUMCAT-PWY]]
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* [[PWY-1422]]
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* [[PWY-6318]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3032}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=487}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
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{{#set: centisome position=15.765620    }}
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* UNIPROT:
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{{#set: reaction associated=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN|HPPD|RXN-10815}}
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** [http://www.uniprot.org/uniprot/Q57195 Q57195]
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{{#set: pathway associated=PWY-1581|PWY-7432|TYRFUMCAT-PWY|PWY-1422|PWY-6318}}
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** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
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** [http://www.uniprot.org/uniprot/O33259 O33259]
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** [http://www.uniprot.org/uniprot/Q55786 Q55786]
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** [http://www.uniprot.org/uniprot/Q09582 Q09582]
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** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
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** [http://www.uniprot.org/uniprot/P13009 P13009]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.1.1.13}}
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{{#set: gene associated=Tiso_gene_1602}}
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{{#set: in pathway=PWY-3841|HOMOSER-METSYN-PWY|1CMET2-PWY|ADENOSYLHOMOCYSCAT-PWY|HSERMETANA-PWY|PWY-2201}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:08, 21 March 2018

Gene Tiso_gene_18328

  • right end position:
    • 3032
  • transcription direction:
    • POSITIVE
  • left end position:
    • 487
  • centisome position:
    • 15.765620
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=N6-L-threonylcarbamoyladenine37-tRNAs&oldid=39040"