Difference between revisions of "RXN-13398"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_1612 == * right end position: ** 3491 * transcription direction: ** NEGATIVE * left end position: ** 383 * centisome position: ** 0.8684216...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13398 RXN-13398] == * direction: ** LEFT-TO-RIGHT * common name: ** rieske_2fe-2sdomainiss ** t...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_1612 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13398 RXN-13398] ==
−
* right end position:
+
* direction:
−
** 3491
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** rieske_2fe-2sdomainiss
−
* left end position:
+
** tic55_component_of_chloroplast_import_machinery
−
** 383
+
** isp_domain-containing_protein
−
* centisome position:
+
* ec number:
−
** 0.8684216   
+
** [http://enzyme.expasy.org/EC/1.14.13.122 EC-1.14.13.122]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[ACETATE--COA-LIGASE-RXN]]
+
* With identifiers:
 +
** 2 [[PROTON]][c] '''+''' 2 [[NADPH]][c] '''+''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 2 [[OXYGEN-MOLECULE]][c] '''=>''' 2 [[NADP]][c] '''+''' 1 [[CPD-7014]][c] '''+''' 3 [[WATER]][c]
 +
* With common name(s):
 +
** 2 H+[c] '''+''' 2 NADPH[c] '''+''' 1 chlorophyllide a[c] '''+''' 2 oxygen[c] '''=>''' 2 NADP+[c] '''+''' 1 chlorophyllide b[c] '''+''' 3 H2O[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13817]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[orthology-synechocystis]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
** Source: [[orthology-creinhardtii]]
+
* Gene: [[Tiso_gene_8091]]
−
== Pathways associated ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY66-161]]
+
*** Assignment: EC-NUMBER
−
* [[PWY66-21]]
+
* Gene: [[Tiso_gene_12611]]
−
* [[PWY66-162]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY0-1313]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-6672]]
+
* Gene: [[Tiso_gene_152]]
−
* [[PWY-7118]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4002]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=3491}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22139 22139]
−
{{#set: left end position=383}}
+
* LIGAND-RXN:
−
{{#set: centisome position=0.8684216    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R10080 R10080]
−
{{#set: reaction associated=ACETATE--COA-LIGASE-RXN}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY66-161|PWY66-21|PWY66-162|PWY0-1313|PWY-6672|PWY-7118}}
+
{{#set: common name=rieske_2fe-2sdomainiss}}
 +
{{#set: common name=tic55_component_of_chloroplast_import_machinery}}
 +
{{#set: common name=isp_domain-containing_protein}}
 +
{{#set: ec number=EC-1.14.13.122}}
 +
{{#set: gene associated=Tiso_gene_13817|Tiso_gene_8091|Tiso_gene_12611|Tiso_gene_152|Tiso_gene_4002}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:08, 21 March 2018

Reaction RXN-13398

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • rieske_2fe-2sdomainiss
    • tic55_component_of_chloroplast_import_machinery
    • isp_domain-containing_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13398&oldid=39713"