Difference between revisions of "RIBOFLAVIN-SYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16027 RXN-16027] == * direction: ** REVERSIBLE * common name: ** monogalactosyldiacylglycerol_s...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16027 RXN-16027] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** monogalactosyldiacylglycerol_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.46 EC-2.4.1.46]
+
** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-14553]][c] '''+''' 1 [[CPD-17272]][c] '''<=>''' 1 [[CPD-2187]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[RIBOFLAVIN]][c] '''+''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-&alpha;-D-galactose[c] '''+''' 1 1-oleoyl-2-palmitoyl-glycerol[c] '''<=>''' 1 1-18:1-2-16:0-monogalactosyldiacylglycerol[c] '''+''' 1 H+[c] '''+''' 1 UDP[c]
+
** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 riboflavin[c] '''+''' 1 5-amino-6-(D-ribitylamino)uracil[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_9530]]
+
* Gene: [[Tiso_gene_13686]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=monogalactosyldiacylglycerol_synthase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
−
{{#set: ec number=EC-2.4.1.46}}
+
* LIGAND-RXN:
−
{{#set: gene associated=Tiso_gene_9530}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
−
{{#set: in pathway=}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P11998 P11998]
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/P16440 P16440]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
 +
** [http://www.uniprot.org/uniprot/O24854 O24854]
 +
** [http://www.uniprot.org/uniprot/O26237 O26237]
 +
** [http://www.uniprot.org/uniprot/P66037 P66037]
 +
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
 +
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
 +
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
 +
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
 +
** [http://www.uniprot.org/uniprot/P45273 P45273]
 +
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
 +
** [http://www.uniprot.org/uniprot/O66529 O66529]
 +
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
 +
** [http://www.uniprot.org/uniprot/O28856 O28856]
 +
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 +
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-2.5.1.9}}
 +
{{#set: gene associated=Tiso_gene_13686}}
 +
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:12, 21 March 2018

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RIBOFLAVIN-SYN-RXN&oldid=40168"