Difference between revisions of "RXN-8675"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** uroporphyrinogen methyltransfe...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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* common name:
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** thiamine salvage II
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* Synonym(s):
 
* Synonym(s):
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** thiamin salvage II
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** uroporphyrinogen methyltransferase
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** uroporphyrinogen-III methyltransferase
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** adenosylmethionine-uroporphyrinogen III methyltransferase
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** S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
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** SirA
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** CysG
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** uroporphyrin-III C-methyltransferase (incorrect)
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** S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''5''' reactions in the full pathway
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* With identifiers:
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* [[PWY-6910]]
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CPD-9038]][c] '''=>''' 1 [[DIHYDROSIROHYDROCHLORIN]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
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** 0 associated gene:
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* With common name(s):
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* [[THI-P-SYN-RXN]]
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 precorrin-1[c] '''=>''' 1 precorrin-2[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
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** 3 associated gene(s):
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*** [[Tiso_gene_10320]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_2159]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_2160]]
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* Gene: [[Tiso_gene_8614]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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* [[THIAZOLSYN3-RXN]]
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* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
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** 1 associated gene(s):
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** '''3''' reactions found over '''15''' reactions in the full pathway
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*** [[Tiso_gene_3173]]
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* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
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** 1 reconstruction source(s) associated:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
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== Reaction(s) not found ==
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=THI-P-KIN-RXN THI-P-KIN-RXN]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6897 PWY-6897]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21972 21972]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=thiamine salvage II}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
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{{#set: common name=thiamin salvage II}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=3}}
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{{#set: common name=uroporphyrinogen methyltransferase|uroporphyrinogen-III methyltransferase|adenosylmethionine-uroporphyrinogen III methyltransferase|S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase|SirA|CysG|uroporphyrin-III C-methyltransferase (incorrect)|S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)}}
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{{#set: total reaction=5}}
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{{#set: gene associated=Tiso_gene_8614}}
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{{#set: completion rate=60.0}}
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{{#set: in pathway=PWY-7376|PWY-7377|PWY-5194|PWY-5196}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:34, 21 March 2018

Reaction RXN-8675

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • uroporphyrinogen methyltransferase
    • uroporphyrinogen-III methyltransferase
    • adenosylmethionine-uroporphyrinogen III methyltransferase
    • S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
    • SirA
    • CysG
    • uroporphyrin-III C-methyltransferase (incorrect)
    • S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): PWY-7376
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): PWY-7377
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-5194, siroheme biosynthesis: PWY-5194
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis: PWY-5196
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8675&oldid=42488"