Difference between revisions of "THI-P-SYN-RXN"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-Substituted-Glutathione S-Substituted-Glutathione] == * common name: ** a glutathione-toxin c...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_mon...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == |
+ | * direction: | ||
+ | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** ORF |
+ | ** thiamine_monophosphate_synthase | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3] | ||
* Synonym(s): | * Synonym(s): | ||
− | |||
− | |||
− | == Reaction(s) | + | == Reaction Formula == |
− | == | + | * With identifiers: |
− | * [[ | + | ** 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c] |
− | == | + | * With common name(s): |
+ | ** 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 H+[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 diphosphate[c] '''+''' 1 thiamine phosphate[c] | ||
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[Tiso_gene_10320]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_2159]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_2160]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | == Pathways == | ||
+ | * [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: common name= | + | * RHEA: |
− | {{#set: common name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328] |
− | {{#set: | + | * LIGAND-RXN: |
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P41835 P41835] | ||
+ | ** [http://www.uniprot.org/uniprot/P71350 P71350] | ||
+ | ** [http://www.uniprot.org/uniprot/O25514 O25514] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01] | ||
+ | ** [http://www.uniprot.org/uniprot/P30137 P30137] | ||
+ | ** [http://www.uniprot.org/uniprot/P39594 P39594] | ||
+ | ** [http://www.uniprot.org/uniprot/P40386 P40386] | ||
+ | ** [http://www.uniprot.org/uniprot/P72965 P72965] | ||
+ | ** [http://www.uniprot.org/uniprot/O48881 O48881] | ||
+ | ** [http://www.uniprot.org/uniprot/O34294 O34294] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5] | ||
+ | {{#set: direction=LEFT-TO-RIGHT}} | ||
+ | {{#set: common name=ORF}} | ||
+ | {{#set: common name=thiamine_monophosphate_synthase}} | ||
+ | {{#set: ec number=EC-2.5.1.3}} | ||
+ | {{#set: gene associated=Tiso_gene_10320|Tiso_gene_2159|Tiso_gene_2160}} | ||
+ | {{#set: in pathway=PWY-6897|PWY-6908|PWY-7356|PWY-7357}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 19:37, 21 March 2018
Contents
Reaction THI-P-SYN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- thiamine_monophosphate_synthase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP[c] + 1 PROTON[c] + 1 THZ-P[c] => 1 PPI[c] + 1 THIAMINE-P[c]
- With common name(s):
- 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] + 1 H+[c] + 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] => 1 diphosphate[c] + 1 thiamine phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_10320
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_2159
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_2160
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY-6897, thiamine salvage II: PWY-6897
- 3 reactions found over 5 reactions in the full pathway
- PWY-6908, thiamine diphosphate biosynthesis IV (eukaryotes): PWY-6908
- 3 reactions found over 3 reactions in the full pathway
- PWY-7356, thiamine salvage IV (yeast): PWY-7356
- 5 reactions found over 7 reactions in the full pathway
- PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
- 3 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: