Difference between revisions of "1.14.11.2-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDRO-SHIKIMATE 3-DEHYDRO-SHIKIMATE] == * smiles: ** C([O-])(=O)C1(=CC(=O)C(O)C(O)C1) * com...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDRO-SHIKIMATE 3-DEHYDRO-SHIKIMATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
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* smiles:
+
* direction:
−
** C([O-])(=O)C1(=CC(=O)C(O)C(O)C1)
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-dehydroshikimate
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** prolyl_4-hydroxylase
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* inchi key:
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** ORF
−
** InChIKey=SLWWJZMPHJJOPH-PHDIDXHHSA-M
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* ec number:
−
* molecular weight:
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** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
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** 171.129   
+
 
* Synonym(s):
 
* Synonym(s):
−
** 3-dehydroshikimic acid
 
−
** 5-dehydroshikimic acid
 
−
** 5-dehydroshikimate
 
  
−
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROCOLLAGEN-L-PROLINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c]
−
* [[RXN-7968]]
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* With common name(s):
−
== Reaction(s) of unknown directionality ==
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** 1 a [procollagen]-L-proline[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c]
−
* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_4246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18689]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18933]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9035]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3021]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13008]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9636]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9165]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6296]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2158]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16122]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9455]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16842]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17823]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18208]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_292]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18145]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9873]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15328]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1468]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2280]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19638]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17593]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18235]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15594]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8652]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17919]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9227]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460360 5460360]
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** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
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* CHEMSPIDER:
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* UNIPROT:
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** [http://www.chemspider.com/Chemical-Structure.4573915.html 4573915]
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** [http://www.uniprot.org/uniprot/P21195 P21195]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q10576 Q10576]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16630 16630]
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** [http://www.uniprot.org/uniprot/P16924 P16924]
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* BIGG : 3dhsk
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** [http://www.uniprot.org/uniprot/P13674 P13674]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P05307 P05307]
−
** [http://www.genome.jp/dbget-bin/www_bget?C02637 C02637]
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** [http://www.uniprot.org/uniprot/P09102 P09102]
−
{{#set: smiles=C([O-])(=O)C1(=CC(=O)C(O)C(O)C1)}}
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** [http://www.uniprot.org/uniprot/P07237 P07237]
−
{{#set: common name=3-dehydroshikimate}}
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** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
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{{#set: inchi key=InChIKey=SLWWJZMPHJJOPH-PHDIDXHHSA-M}}
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** [http://www.uniprot.org/uniprot/P04785 P04785]
−
{{#set: molecular weight=171.129    }}
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** [http://www.uniprot.org/uniprot/P54001 P54001]
−
{{#set: common name=3-dehydroshikimic acid|5-dehydroshikimic acid|5-dehydroshikimate}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: consumed by=SHIKIMATE-5-DEHYDROGENASE-RXN}}
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{{#set: common name=prolyl_4-hydroxylase}}
−
{{#set: produced by=RXN-7968}}
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{{#set: common name=ORF}}
−
{{#set: reversible reaction associated=3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
+
{{#set: ec number=EC-1.14.11.2}}
 +
{{#set: gene associated=Tiso_gene_4246|Tiso_gene_18689|Tiso_gene_18933|Tiso_gene_9035|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_9636|Tiso_gene_9165|Tiso_gene_6296|Tiso_gene_2158|Tiso_gene_16122|Tiso_gene_9455|Tiso_gene_16842|Tiso_gene_17823|Tiso_gene_18208|Tiso_gene_292|Tiso_gene_18145|Tiso_gene_9873|Tiso_gene_15328|Tiso_gene_1468|Tiso_gene_2280|Tiso_gene_19638|Tiso_gene_17593|Tiso_gene_18235|Tiso_gene_15594|Tiso_gene_8652|Tiso_gene_17919|Tiso_gene_9227}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:41, 21 March 2018

Reaction 1.14.11.2-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • prolyl_4-hydroxylase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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