4.2.99.18-RXN

Reaction 4.2.99.18-RXN

• ec number:
  • EC-4.2.99.18
• direction:
  • LEFT-TO-RIGHT
• common name:
  • DNA-AP site lyase
  • DNA-(apurinic or apyrimidinic site) lyase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 DNA-containing-abasic-Sites[c] => 1 3-terminal-unsaturated-sugars[c] + 1 PROTON[c] + 1 5-Phospho-terminated-DNAs[c]
• With common name(s):
  • 1 a DNA containing an apurinic/apyrimidinic site[c] => 1 a 3'-terminal unsaturated sugar[c] + 1 H+[c] + 1 a 5'-phospho-[DNA][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g6428.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g12230.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
• Gene: g4908.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g5958.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g10126.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g6501.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g7001.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g10871.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g5340.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica

Reconstruction information

• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools
• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph

External links

• UNIPROT:
  • P0AB83
  • P28352
  • Q58829
  • Q9PHS1
  • Q9JVT0
  • Q9PNL1
  • P44319
  • Q9CGM5
  • P04418
  • P27695
  • P23196
  • P22936
  • P43138
  • P95945
  • P50525