Difference between revisions of "4.2.99.18-RXN"

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Latest revision as of 11:47, 27 June 2019

Contents

1 Reaction 4.2.99.18-RXN
2 Reaction Formula
3 Genes associated with this reaction
4 Pathways
5 Reconstruction information
6 External links

Reaction 4.2.99.18-RXN

ec number:
- EC-4.2.99.18
direction:
- LEFT-TO-RIGHT
common name:
- DNA-AP site lyase
- DNA-(apurinic or apyrimidinic site) lyase
Synonym(s):

Reaction Formula

With identifiers:
- 1 DNA-containing-abasic-Sites[c] => 1 3-terminal-unsaturated-sugars[c] + 1 PROTON[c] + 1 5-Phospho-terminated-DNAs[c]
With common name(s):
- 1 a DNA containing an apurinic/apyrimidinic site[c] => 1 a 3'-terminal unsaturated sugar[c] + 1 H+[c] + 1 a 5'-phospho-[DNA][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Gene: g6428.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: GO-TERM
- Source: orthology-saccharina_japonica
Gene: g12230.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: EC-NUMBER
Gene: g4908.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: EC-NUMBER
- Source: orthology-saccharina_japonica
Gene: g5958.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: EC-NUMBER
- Source: orthology-saccharina_japonica
Gene: g10126.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: GO-TERM
- Source: orthology-saccharina_japonica
Gene: g6501.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: GO-TERM
- Source: orthology-saccharina_japonica
Gene: g7001.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-saccharina_japonica
Gene: g10871.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: GO-TERM
- Source: orthology-saccharina_japonica
Gene: g5340.t1
- Source: annotation-cladosiphon_okamuranus
  - Assignment: EC-NUMBER
- Source: orthology-saccharina_japonica

Pathways

Reconstruction information

Category: annotation
- Source: annotation-cladosiphon_okamuranus
  - Tool: pathwaytools
Category: orthology
- Source: orthology-saccharina_japonica
  - Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
  - Tool: pantograph

External links

UNIPROT:
- P0AB83
- P28352
- Q58829
- Q9PHS1
- Q9JVT0
- Q9PNL1
- P44319
- Q9CGM5
- P04418
- P27695
- P23196
- P22936
- P43138
- P95945
- P50525

Retrieved from "http://gem-aureme.irisa.fr/cokagem/index.php?title=4.2.99.18-RXN&oldid=13183"

Reaction