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Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of S_thermosulfidooxidans_str_Cutipay results to a Genome scale Model containing 1067 reactions, 855 metabolites, 545 genes and 108 pathways. This GeM was obtained based on the following sources:

• Based on orthology data:
  • Tool: Pantograph
    • From template AFERROOXIDANS creation of a metabolic network containing: 221 reactions
    • From template CLJUNGDAHLII creation of a metabolic network containing: 341 reactions
    • From template BSUBTILIS creation of a metabolic network containing: 460 reactions
• Based on expertise:
  • • 402 reaction(s) added

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme@inria.fr