Difference between revisions of "B471 RS0108585"

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<strong>MediaWiki has been successfully installed.</strong>
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== CUTIGEM description ==
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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The automatic reconstruction of ''S_thermosulfidooxidans_str_Cutipay'' results to a Genome scale Model containing 1067 reactions, 854 metabolites, 541 genes and 108 pathways. This GeM was obtained based on the following sources:
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* Based on orthology data:
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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*** From template ''AFERROOXIDANS'' creation of a metabolic network containing: 220 reactions
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*** From template ''CLJUNGDAHLII'' creation of a metabolic network containing: 338 reactions
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*** From template ''BSUBTILIS'' creation of a metabolic network containing: 459 reactions
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* Based on expertise:
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*** 405 reaction(s) added
  
Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
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[[FILE:venn.png|frameless|border]]
  
== Getting started ==
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== Collaborative curation ==  
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
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* Suggest reactions to add or remove:
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
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** Download this [[MEDIA:Add_delete_reaction.csv|from]]
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
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* Suggest new reactions to create and add:
* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
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** Download this [[MEDIA:Reaction_creator.csv|form]]
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* '''Follow the examples given in the form to correctly share your suggestions'''
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* Send the completed form(s) to: CONTACT_MAIL

Revision as of 23:29, 9 January 2018

CUTIGEM description

Automatic reconstruction with AuReMe

The automatic reconstruction of S_thermosulfidooxidans_str_Cutipay results to a Genome scale Model containing 1067 reactions, 854 metabolites, 541 genes and 108 pathways. This GeM was obtained based on the following sources:

  • Based on orthology data:
    • Tool: Pantograph
      • From template AFERROOXIDANS creation of a metabolic network containing: 220 reactions
      • From template CLJUNGDAHLII creation of a metabolic network containing: 338 reactions
      • From template BSUBTILIS creation of a metabolic network containing: 459 reactions
  • Based on expertise:
      • 405 reaction(s) added

Venn.png

Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form to correctly share your suggestions
  • Send the completed form(s) to: CONTACT_MAIL