Difference between revisions of "Pydxn"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DCYTD DCYTD] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxycytidine deaminase * Synonym(s...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAMAS UAMAS] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylmuramoyl-L-alanine synt...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/DCYTD DCYTD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAMAS UAMAS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Deoxycytidine deaminase
+
** UDP-N-acetylmuramoyl-L-alanine synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[dcyt]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[duri]][c]
+
** 1.0 [[uamr]][c] '''+''' 1.0 [[ala__L]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[uama]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 Deoxycytidine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Deoxyuridine[c]
+
** 1.0 UDP-N-acetylmuramate[c] '''+''' 1.0 L-Alanine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanine[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0118750]]
+
* [[B471_RS0105365]]
 
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
−
* [[B471_RS0110870]]
 
 
** [[pantograph]]-[[aferrooxidans]]
 
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''68''' reactions found over '''244''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
+
* [[map00471]]: [http://www.genome.jp/dbget-bin/www_bget?map00471 map00471]
−
** '''22''' reactions found over '''72''' reactions in the full pathway
+
** '''3''' reactions found over '''10''' reactions in the full pathway
 +
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
 +
** '''14''' reactions found over '''27''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 3.5.4.5
 
−
* BioCyc : META:CYTIDEAM-RXN
 
−
* MetaNetX (MNX) Equation : MNXR97207
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13433 13433]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23372 23372]
−
* Reactome : REACT_R-BTA-73608
+
* EC Number : 6.3.2.8
−
* KEGG Reaction : R02485
+
* MetaNetX (MNX) Equation : MNXR105039
 +
* KEGG Reaction : R03193
 +
* BioCyc : META:UDP-NACMUR-ALA-LIG-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Deoxycytidine deaminase}}
+
{{#set: common name=UDP-N-acetylmuramoyl-L-alanine synthetase}}
−
{{#set: gene associated=B471_RS0118750|B471_RS0110870}}
+
{{#set: gene associated=B471_RS0105365}}
−
{{#set: in pathway=map00240|map01100|map00983}}
+
{{#set: in pathway=map01100|map00471|map00550}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
 

Revision as of 00:33, 21 March 2018

Reaction UAMAS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylmuramoyl-L-alanine synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UDP-N-acetylmuramate[c] + 1.0 L-Alanine[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c] + 1.0 UDP-N-acetylmuramoyl-L-alanine[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 6.3.2.8
  • MetaNetX (MNX) Equation : MNXR105039
  • KEGG Reaction : R03193
  • BioCyc : META:UDP-NACMUR-ALA-LIG-RXN




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