Difference between revisions of "Pap"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ASPO1 ASPO1] == * direction: ** LEFT-TO-RIGHT * common name: ** L-aspartate oxidase * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUSy GLUSy] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate synthase (NADPH) * Synony...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ASPO1 ASPO1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUSy GLUSy] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-aspartate oxidase
+
** Glutamate synthase (NADPH)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[asp__L]][c] '''+''' 1.0 [[o2]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[h2o2]][c] '''+''' 1.0 [[oaa]][c]
+
** 1.0 [[nadph]][c] '''+''' 1.0 [[akg]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[gln__L]][c] '''=>''' 2.0 [[glu__L]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Aspartate[c] '''+''' 1.0 O2 O2[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Hydrogen peroxide[c] '''+''' 1.0 Oxaloacetate[c]
+
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 2-Oxoglutarate[c] '''+''' 1.0 H+[c] '''+''' 1.0 L-Glutamine[c] '''=>''' 2.0 L-Glutamate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS23075]]
+
* [[B471_RS0109970]]
 +
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 +
* [[B471_RS0105685]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
* [[B471_RS0115910]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
* [[B471_RS0103585]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''16''' reactions found over '''155''' reactions in the full pathway
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
−
** '''6''' reactions found over '''102''' reactions in the full pathway
+
** '''101''' reactions found over '''715''' reactions in the full pathway
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
* [[map00910]]: [http://www.genome.jp/dbget-bin/www_bget?map00910 map00910]
−
** '''24''' reactions found over '''135''' reactions in the full pathway
+
** '''5''' reactions found over '''36''' reactions in the full pathway
−
* [[map00950]]: [http://www.genome.jp/dbget-bin/www_bget?map00950 map00950]
+
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
** '''2''' reactions found over '''33''' reactions in the full pathway
+
** '''78''' reactions found over '''228''' reactions in the full pathway
 
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
 
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
 
** '''22''' reactions found over '''93''' reactions in the full pathway
 
** '''22''' reactions found over '''93''' reactions in the full pathway
−
* [[map00360]]: [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''7''' reactions found over '''109''' reactions in the full pathway
+
** '''148''' reactions found over '''694''' reactions in the full pathway
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
+
−
** '''17''' reactions found over '''59''' reactions in the full pathway
+
−
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
+
−
** '''11''' reactions found over '''163''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-reaction_to_add_delete]]
 +
*** Comment: [[reaction added from literature evidence or biological expertise]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19025 19025]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15501 15501]
−
* MetaNetX (MNX) Equation : MNXR96088
+
* EC Number : 1.4.1.13
−
* KEGG Reaction : R00357
+
* MetaNetX (MNX) Equation : MNXR100291
−
* EC Number : 1.4.3.16
+
* KEGG Reaction : R00114
 +
* BioCyc : META:GLUTAMATESYN-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=L-aspartate oxidase}}
+
{{#set: common name=Glutamate synthase (NADPH)}}
−
{{#set: gene associated=B471_RS23075}}
+
{{#set: gene associated=B471_RS0109970|B471_RS0105685|B471_RS0115910|B471_RS0103585}}
−
{{#set: in pathway=map01100|map00280|map00350|map00270|map00950|map00250|map00360|map00400|map00380}}
+
{{#set: in pathway=map01100|map01110|map01120|map00910|map01230|map00250|map01130}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans|manual-reaction_to_add_delete}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=bsubtilis}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Revision as of 00:34, 21 March 2018

Reaction GLUSy

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glutamate synthase (NADPH)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 2-Oxoglutarate[c] + 1.0 H+[c] + 1.0 L-Glutamine[c] => 2.0 L-Glutamate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.4.1.13
  • MetaNetX (MNX) Equation : MNXR100291
  • KEGG Reaction : R00114
  • BioCyc : META:GLUTAMATESYN-RXN





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