Difference between revisions of "Octa"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGSA141_CUT PGSA141_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DHAD2 DHAD2] == * direction: ** LEFT-TO-RIGHT * common name: ** Dihydroxy-acid dehydratase (2,3-dih...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGSA141_CUT PGSA141_CUT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DHAD2 DHAD2] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glyc3p]][c] '''+''' 1.0 [[cdpdtdec7eg]][c] '''<=>''' 1.0 [[cmp]][c] '''+''' 1.0 [[pgp141]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[23dhmp]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[3mop]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glycerol 3-phosphate[c] '''+''' 1.0 CDP-1,2-ditetradec-7-enoylglycerol[c] '''<=>''' 1.0 CMP C9H12N3O8P[c] '''+''' 1.0 Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)[c] '''+''' 1.0 H+[c]
+
** 1.0 (R)-2,3-Dihydroxy-3-methylpentanoate[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 (S)-3-Methyl-2-oxopentanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0110395]]
+
* [[B471_RS0117830]]
−
** MANUAL
+
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
 +
** '''20''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
 +
** '''15''' reactions found over '''49''' reactions in the full pathway
 +
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
 +
** '''26''' reactions found over '''80''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: gene associated=B471_RS0110395}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27694 27694]
−
{{#set: in pathway=}}
+
* EC Number : 4.2.1.9
−
{{#set: reconstruction category=manual}}
+
* MetaNetX (MNX) Equation : MNXR97359
−
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+
* KEGG Reaction : R05070
 +
* BioCyc : META:DIHYDROXYMETVALDEHYDRAT-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)}}
 +
{{#set: gene associated=B471_RS0117830}}
 +
{{#set: in pathway=map01100|map01110|map00770|map00290|map01210|map01230|map01130}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 00:34, 21 March 2018

Reaction DHAD2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 (R)-2,3-Dihydroxy-3-methylpentanoate[c] => 1.0 H2O H2O[c] + 1.0 (S)-3-Methyl-2-oxopentanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.2.1.9
  • MetaNetX (MNX) Equation : MNXR97359
  • KEGG Reaction : R05070
  • BioCyc : META:DIHYDROXYMETVALDEHYDRAT-RXN




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