Difference between revisions of "Pan4p"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSt2r LYSt2r] == * direction: ** REVERSIBLE * common name: ** L lysine reversible transport via pr...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DALAt2r_CUT DALAt2r_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYSt2r LYSt2r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DALAt2r_CUT DALAt2r_CUT] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
* common name:
+
** L lysine reversible transport via proton symport
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h]][e] '''+''' 1.0 [[lys__L]][e] '''<=>''' 1.0 [[lys__L]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[ala__D]][e] '''+''' 1.0 [[h]][e] '''=>''' 1.0 [[ala__D]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H+[e] '''+''' 1.0 L-Lysine[e] '''<=>''' 1.0 L-Lysine[c] '''+''' 1.0 H+[c]
+
** 1.0 D-Alanine[e] '''+''' 1.0 H+[e] '''=>''' 1.0 D-Alanine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
 
* [[B471_RS0105160]]
 
* [[B471_RS0105160]]
** [[pantograph]]-[[cljungdahlii]]
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** missing_rxn_creator
 
* [[B471_RS0101195]]
 
* [[B471_RS0101195]]
** [[pantograph]]-[[cljungdahlii]]
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** missing_rxn_creator
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-missing_rxn_creator]]
*** [[cljungdahlii]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28911 28911]
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* MetaNetX (MNX) Equation : MNXR101266
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* BioCyc : META:TRANS-RXN-58
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{{#set: direction=REVERSIBLE}}
+
{{#set: common name=L lysine reversible transport via proton symport}}
+
 
{{#set: gene associated=B471_RS0105160|B471_RS0101195}}
 
{{#set: gene associated=B471_RS0105160|B471_RS0101195}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
{{#set: reconstruction source=cljungdahlii}}
+
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}

Revision as of 00:35, 21 March 2018

Reaction DALAt2r_CUT

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Alanine[e] + 1.0 H+[e] => 1.0 D-Alanine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links