Difference between revisions of "3dhsk"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLCt2_CUT GLCt2_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MNt2 MNt2] == * direction: ** LEFT-TO-RIGHT * common name: ** Manganese transport in via proton sym...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLCt2_CUT GLCt2_CUT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MNt2 MNt2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Manganese transport in via proton symport
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[glc__D]][e] '''+''' 1.0 [[h]][e] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[glc__D]][c]
+
** 1.0 [[mn2]][e] '''+''' 1.0 [[h]][e] '''=>''' 1.0 [[mn2]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 D-Glucose[e] '''+''' 1.0 H+[e] '''=>''' 1.0 H+[c] '''+''' 1.0 D-Glucose[c]
+
** 1.0 Manganese[e] '''+''' 1.0 H+[e] '''=>''' 1.0 Manganese[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[B471_RS0118435]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0114105]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0118430]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0104155]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0114115]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[manual]]:
+
* Category: [[orthology]]
** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29007 29007]
 +
* MetaNetX (MNX) Equation : MNXR101681
 +
* BioCyc : META:TRANS-RXN-241
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Manganese transport in via proton symport}}
 +
{{#set: gene associated=B471_RS0118435|B471_RS0114105|B471_RS0118430|B471_RS0104155|B471_RS0114115}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 23:35, 20 March 2018

Reaction MNt2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Manganese transport in via proton symport
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 mn2[e] + 1.0 h[e] => 1.0 mn2[c] + 1.0 h[c]
  • With common name(s):
    • 1.0 Manganese[e] + 1.0 H+[e] => 1.0 Manganese[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR101681
  • BioCyc : META:TRANS-RXN-241