Difference between revisions of "Arbt6p"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SELNPS SELNPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Selenophosphate synthase * Synony...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PROt2r_CUT PROt2r_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * Wit...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/SELNPS SELNPS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PROt2r_CUT PROt2r_CUT] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** Selenophosphate synthase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[atp]][c] '''+''' 1.0 [[seln]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[selnp]][c] '''+''' 1.0 [[pi]][c]
+
** 1.0 [[h]][e] '''+''' 1.0 [[pro__L]][e] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[pro__L]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Selenide[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 Selenophosphate[c] '''+''' 1.0 Phosphate[c]
+
** 1.0 H+[e] '''+''' 1.0 L-Proline[e] '''=>''' 1.0 H+[c] '''+''' 1.0 L-Proline[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0110820]]
+
* [[B471_RS0105560]]
** [[pantograph]]-[[cljungdahlii]]
+
** missing_rxn_creator
 +
* [[B471_RS0101195]]
 +
** missing_rxn_creator
 +
* [[B471_RS0105160]]
 +
** missing_rxn_creator
 +
* [[B471_RS0114030]]
 +
** missing_rxn_creator
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
 
** '''6''' reactions found over '''35''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[manual]]
** [[pantograph]]:
+
** Source: [[manual-missing_rxn_creator]]
*** [[cljungdahlii]]
+
*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18737 18737]
 
* BioCyc : META:2.7.9.3-RXN
 
* MetaNetX (MNX) Equation : MNXR104322
 
* KEGG Reaction : R03595
 
* EC Number : 2.7.9.3
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Selenophosphate synthase}}
+
{{#set: gene associated=B471_RS0105560|B471_RS0101195|B471_RS0105160|B471_RS0114030}}
{{#set: gene associated=B471_RS0110820}}
+
{{#set: in pathway=}}
{{#set: in pathway=map01100|map00450}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: reconstruction source=cljungdahlii}}
+

Revision as of 00:35, 21 March 2018

Reaction PROt2r_CUT

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[e] + 1.0 L-Proline[e] => 1.0 H+[c] + 1.0 L-Proline[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links