Difference between revisions of "Btd RR"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALDD17 ALDD17] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldehyde dehydrogenase heptadeca...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] == * direction: ** REVERSIBLE * common name: ** Ribulose 5-phosphate 3-epimerase * Synonym...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ALDD17 ALDD17] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Aldehyde dehydrogenase  heptadecanal  NAD
+
** Ribulose 5-phosphate 3-epimerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[hpdcal]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[nad]][c] '''=>''' 1.0 [[hpdca]][c] '''+''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c]
+
** 1.0 [[ru5p__D]][c] '''<=>''' 1.0 [[xu5p__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Heptadecanal C17H34O[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''=>''' 1.0 Heptadecanoate  C170  C17H33O2[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c]
+
** 1.0 D-Ribulose 5-phosphate[c] '''<=>''' 1.0 D-Xylulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0115620]]
+
* [[B471_RS23765]]
−
** [[pantograph]]-[[bsubtilis]]
+
** [[pantograph]]-[[cljungdahlii]]
−
* [[B471_RS0119455]]
+
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
 +
** '''6''' reactions found over '''54''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''18''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''20''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR95740
+
* EC Number : 5.1.3.1
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* BioCyc : META:RIBULP3EPIM-RXN
−
{{#set: common name=Aldehyde dehydrogenase  heptadecanal  NAD }}
+
* MetaNetX (MNX) Equation : MNXR104083
−
{{#set: gene associated=B471_RS0115620|B471_RS0119455}}
+
* RHEA:
−
{{#set: in pathway=}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
 +
* Reactome : REACT_R-ATH-199803
 +
* KEGG Reaction : R01529
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Ribulose 5-phosphate 3-epimerase}}
 +
{{#set: gene associated=B471_RS23765}}
 +
{{#set: in pathway=map01100|map01110|map01120|map00040|map01200|map00710|map01230|map01130|map00030}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=bsubtilis}}
 

Revision as of 00:37, 21 March 2018

Reaction RPE

  • direction:
    • REVERSIBLE
  • common name:
    • Ribulose 5-phosphate 3-epimerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Ribulose 5-phosphate[c] <=> 1.0 D-Xylulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 5.1.3.1
  • BioCyc : META:RIBULP3EPIM-RXN
  • MetaNetX (MNX) Equation : MNXR104083
  • RHEA:
  • Reactome : REACT_R-ATH-199803
  • KEGG Reaction : R01529




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