Difference between revisions of "Sprm"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUTRS GLUTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamyl-tRNA synthetase * Synony...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/URIDK2r URIDK2r] == * direction: ** REVERSIBLE * common name: ** Uridylate kinase (dUMP) * Synonym(...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUTRS GLUTRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/URIDK2r URIDK2r] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glutamyl-tRNA synthetase
+
** Uridylate kinase (dUMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[trnaglu]][c] '''=>''' 1.0 [[glutrna]][c] '''+''' 1.0 [[ppi]][c] '''+''' 1.0 [[amp]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[dump]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[dudp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 TRNA (Glu)[c] '''=>''' 1.0 L-Glutamyl-tRNA(Glu)[c] '''+''' 1.0 Diphosphate[c] '''+''' 1.0 AMP C10H12N5O7P[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DUMP C9H11N2O8P[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DUDP C9H11N2O11P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0110825]]
+
* [[B471_RS0100760]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0107285]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0101025]]
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
** '''68''' reactions found over '''244''' reactions in the full pathway
−
* [[map00860]]: [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860]
+
−
** '''23''' reactions found over '''106''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
+
−
** '''7''' reactions found over '''49''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* Reactome : REACT_R-HSA-379861
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR100295
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30655 30655]
−
* KEGG Reaction : R05578
+
* EC Number : 2.7.4.13
−
* EC Number : 6.1.1
+
* MetaNetX (MNX) Equation : MNXR105160
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R02098
−
{{#set: common name=Glutamyl-tRNA synthetase}}
+
* BioCyc : META:RXN-14122
−
{{#set: gene associated=B471_RS0110825}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=map01100|map01110|map00860|map01120|map00970}}
+
{{#set: common name=Uridylate kinase (dUMP)}}
 +
{{#set: gene associated=B471_RS0100760|B471_RS0107285|B471_RS0101025}}
 +
{{#set: in pathway=map01100|map00240}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=bsubtilis}}
 

Revision as of 00:38, 21 March 2018

Reaction URIDK2r

  • direction:
    • REVERSIBLE
  • common name:
    • Uridylate kinase (dUMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 DUMP C9H11N2O8P[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 DUDP C9H11N2O11P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.7.4.13
  • MetaNetX (MNX) Equation : MNXR105160
  • KEGG Reaction : R02098
  • BioCyc : META:RXN-14122




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