Difference between revisions of "Sucbz"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALCD4 ALCD4] == * direction: ** REVERSIBLE * common name: ** Alcohol dehydrogenase (butanol) * Syno...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDS TMDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Thymidylate synthase * Synonym(s): =...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/ALCD4 ALCD4] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDS TMDS] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Alcohol dehydrogenase (butanol)
+
** Thymidylate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[btoh]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[btal]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c]
+
** 1.0 [[dump]][c] '''+''' 1.0 [[mlthf]][c] '''=>''' 1.0 [[dhf]][c] '''+''' 1.0 [[dtmp]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Butanol[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Butanal C4H8O[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
+
** 1.0 DUMP C9H11N2O8P[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c] '''=>''' 1.0 7,8-Dihydrofolate[c] '''+''' 1.0 DTMP C10H13N2O8P[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[B471_RS0115620]]
 
** [[pantograph]]-[[cljungdahlii]]
 
* [[B471_RS0110020]]
 
** [[pantograph]]-[[cljungdahlii]]
 
* [[B471_RS0113260]]
 
** [[pantograph]]-[[cljungdahlii]]
 
* [[B471_RS0119455]]
 
** [[pantograph]]-[[cljungdahlii]]
 
* [[B471_RS0100095]]
 
** [[pantograph]]-[[cljungdahlii]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''68''' reactions found over '''244''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 +
** '''13''' reactions found over '''65''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[manual]]
** [[pantograph]]:
+
** Source: [[manual-reaction_to_add_delete]]
*** [[cljungdahlii]]
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33199 33199]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
* BioCyc : META:RXN-161
+
* MetaNetX (MNX) Equation : MNXR104889
* MetaNetX (MNX) Equation : MNXR95728
+
* KEGG Reaction : R02101
* KEGG Reaction : R03544
+
* EC Number : 2.1.1.45
* EC Number : 1.1.1
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=Thymidylate synthase}}
{{#set: common name=Alcohol dehydrogenase (butanol)}}
+
{{#set: in pathway=map00240|map01100|map00670}}
{{#set: gene associated=B471_RS0115620|B471_RS0110020|B471_RS0113260|B471_RS0119455|B471_RS0100095}}
+
{{#set: reconstruction category=manual}}
{{#set: in pathway=}}
+
{{#set: reconstruction source=manual-reaction_to_add_delete}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=cljungdahlii}}
+

Revision as of 00:39, 21 March 2018

Reaction TMDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Thymidylate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DUMP C9H11N2O8P[c] + 1.0 5,10-Methylenetetrahydrofolate[c] => 1.0 7,8-Dihydrofolate[c] + 1.0 DTMP C10H13N2O8P[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR104889
  • KEGG Reaction : R02101
  • EC Number : 2.1.1.45