Difference between revisions of "3hocoa"

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(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/nad nad] == * common name: ** Nicotinamide adenine dinucleotide * Synonym(s): == Reaction(s)...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GART GART] == * direction: ** LEFT-TO-RIGHT * common name: ** GAR transformylase-T * Synonym(s): =...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
== Metabolite [http://bigg.ucsd.edu/universal/metabolites/nad nad] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GART GART] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Nicotinamide adenine dinucleotide
+
** GAR transformylase-T
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
* [[NADK]]
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* With identifiers:
* [[IPMD]]
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** 1.0 [[atp]][c] '''+''' 1.0 [[for]][c] '''+''' 1.0 [[gar]][c] '''=>''' 1.0 [[fgam]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c]
* [[GLYCL]]
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* With common name(s):
* [[PDH]]
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Formate[c] '''+''' 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] '''=>''' 1.0 N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
* [[HP5CD_1]]
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* [[CODH]]
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== Genes associated with this reaction  ==
* [[ALDD31_1]]
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Genes have been associated with this reaction based on different elements listed below.
* [[ME1]]
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* [[B471_RS0101625]]
* [[GLXO1]]
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** [[pantograph]]-[[bsubtilis]]
* [[NADHI]]
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* [[B471_RS0105250]]
* [[AMPMS2]]
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** [[pantograph]]-[[aferrooxidans]]
* [[UACGAMDH_CUT]]
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== Pathways  ==
* [[GLYALDDr_CUT]]
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== Reconstruction information  ==
* [[SHCHD2]]
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* Category: [[orthology]]
* [[INS2D]]
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** Source: [[orthology-bsubtilis]]
* [[LCADi]]
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*** Tool: [[pantograph]]
* [[THRD]]
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** Source: [[orthology-aferrooxidans]]
* [[UDPGD]]
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*** Tool: [[pantograph]]
* [[SHCHD2_1]]
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* [[PGCD]]
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* [[PRO1x]]
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* [[IMPD]]
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* [[OIVD2]]
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* [[NADK1]]
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* [[NADK3]]
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* [[NADK2]]
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* [[NADK5]]
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* [[NADK4]]
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* [[ALDD8]]
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* [[ALDD9]]
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* [[ABUTD]]
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* [[HISTD1_CUT]]
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* [[OIVD3]]
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* [[ALDD1]]
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* [[PPND]]
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* [[ALDD3]]
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* [[ALDD4]]
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* [[ALDD5]]
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* [[ALDD20x_1]]
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* [[ALDD7]]
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* [[ALDD12]]
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* [[ALDD13]]
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* [[ALDD10]]
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* [[ALDD2x]]
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* [[ALDD16]]
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* [[ALDD17]]
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* [[ALDD14]]
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* [[ALDD15]]
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* [[P5CD]]
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* [[ALDD18]]
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* [[PDX5PO2]]
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* [[ALDD6]]
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* [[ALDD32]]
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* [[HISTD2_AFE]]
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* [[GLUDxi_CUT]]
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* [[GCALDD]]
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* [[ALDD4x]]
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* [[HXAND]]
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* [[BIOMASS]]
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* [[SSALx]]
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* [[SBTD_D2]]
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* [[26DPAi]]
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* [[ALDD11]]
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* [[DHNAOT7]]
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* [[XAND]]
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== Reaction(s) known to produce the compound ==
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* [[EAR180x]]
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* [[EAR141x]]
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* [[NADPPPS]]
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* [[IPDPS]]
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* [[NTRIR2x]]
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* [[EAR161x]]
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* [[EAR120x]]
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* [[CYRDAR_CUT]]
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* [[EAR60x]]
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* [[EAR181x]]
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* [[EAR40x]]
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* [[EAR140x]]
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* [[NADS1]]
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* [[NADS2]]
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* [[NADH4]]
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* [[EAR160x]]
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* [[DMPPS]]
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* [[EAR121x]]
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* [[GAPDHi]]
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* [[EAR100x]]
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* [[MECDPDH2]]
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* [[EAR80x]]
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* [[TDPDRE2_AFE]]
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== Reaction(s) of unknown directionality ==
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* [[THPDH_AFE]]
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* [[ACALD]]
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* [[ACOAD1z_CUT]]
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* [[VALDHr]]
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* [[TRSARr]]
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* [[LLEUDr]]
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* [[ALAD_L]]
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* [[ALCD4]]
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* [[MDH]]
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* [[PERD]]
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* [[HOXPRx]]
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* [[ACOAD3_CUT]]
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* [[BTCOARx_CUT]]
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* [[ALCD2x]]
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* [[FRNDPR2r_CUT]]
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* [[GAPD]]
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* [[ACOAD6_CUT]]
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* [[ACOAD2_CUT]]
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* [[SUCD_AFE]]
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* [[OIVD1r]]
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* [[NMNAT_CUT]]
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* [[HACD1]]
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* [[E4PD]]
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* [[GLTPD]]
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* [[ACOAD7_CUT]]
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* [[HEMEAS_1]]
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* [[BTDD_RR]]
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* [[ACOAD4_1]]
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* [[ACOAD1]]
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* [[ILEDHr]]
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* [[ACOAD5_1]]
+
 
== External links  ==
 
== External links  ==
{{#set: common name=Nicotinamide adenine dinucleotide}}
+
* RHEA:
{{#set: consumed by=NADK|IPMD|GLYCL|PDH|HP5CD_1|CODH|ALDD31_1|ME1|GLXO1|NADHI|AMPMS2|UACGAMDH_CUT|GLYALDDr_CUT|SHCHD2|INS2D|LCADi|THRD|UDPGD|SHCHD2_1|PGCD|PRO1x|IMPD|OIVD2|NADK1|NADK3|NADK2|NADK5|NADK4|ALDD8|ALDD9|ABUTD|HISTD1_CUT|OIVD3|ALDD1|PPND|ALDD3|ALDD4|ALDD5|ALDD20x_1|ALDD7|ALDD12|ALDD13|ALDD10|ALDD2x|ALDD16|ALDD17|ALDD14|ALDD15|P5CD|ALDD18|PDX5PO2|ALDD6|ALDD32|HISTD2_AFE|GLUDxi_CUT|GCALDD|ALDD4x|HXAND|BIOMASS|SSALx|SBTD_D2|26DPAi|ALDD11|DHNAOT7|XAND}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24829 24829]
{{#set: produced by=EAR180x|EAR141x|NADPPPS|IPDPS|NTRIR2x|EAR161x|EAR120x|CYRDAR_CUT|EAR60x|EAR181x|EAR40x|EAR140x|NADS1|NADS2|NADH4|EAR160x|DMPPS|EAR121x|GAPDHi|EAR100x|MECDPDH2|EAR80x|TDPDRE2_AFE}}
+
* EC Number : 2.1.2
{{#set: consumed or produced by=THPDH_AFE|ACALD|ACOAD1z_CUT|VALDHr|TRSARr|LLEUDr|ALAD_L|ALCD4|MDH|PERD|HOXPRx|ACOAD3_CUT|BTCOARx_CUT|ALCD2x|FRNDPR2r_CUT|GAPD|ACOAD6_CUT|ACOAD2_CUT|SUCD_AFE|OIVD1r|NMNAT_CUT|HACD1|E4PD|GLTPD|ACOAD7_CUT|HEMEAS_1|BTDD_RR|ACOAD4_1|ACOAD1|ILEDHr|ACOAD5_1}}
+
* MetaNetX (MNX) Equation : MNXR100042
 +
* KEGG Reaction : R06974
 +
* BioCyc : META:GARTRANSFORMYL2-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=GAR transformylase-T}}
 +
{{#set: gene associated=B471_RS0101625|B471_RS0105250}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 23:40, 20 March 2018

Reaction GART

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GAR transformylase-T
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 Formate[c] + 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] => 1.0 N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide[c] + 1.0 H+[c] + 1.0 Phosphate[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.1.2
  • MetaNetX (MNX) Equation : MNXR100042
  • KEGG Reaction : R06974
  • BioCyc : META:GARTRANSFORMYL2-RXN