Difference between revisions of "Ttdca"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-C-methyl-D-erythritol 2,4-cyclo...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine oxidase * Synonym(s): == R...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
+
** Glycine oxidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[2p4c2me]][c] '''=>''' 1.0 [[2mecdp]][c] '''+''' 1.0 [[cmp]][c]
+
** 1.0 [[o2]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[glx]][c] '''+''' 1.0 [[h2o2]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1.0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate[c] '''+''' 1.0 CMP C9H12N3O8P[c]
+
** 1.0 O2 O2[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Glyoxylate[c] '''+''' 1.0 Hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0104100]]
+
* [[B471_RS0117705]]
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
** [[pantograph]]-[[aferrooxidans]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 
** '''16''' reactions found over '''67''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-bsubtilis]]
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.4.3.19
 +
* BioCyc : META:1.4.3.19-RXN
 +
* MetaNetX (MNX) Equation : MNXR100352
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11532 11532]
* BioCyc : META:RXN0-302
+
* Reactome : REACT_R-BTA-389821
* MetaNetX (MNX) Equation : MNXR101424
+
* KEGG Reaction : R00366
* KEGG Reaction : R05637
+
* EC Number : 4.6.1.12
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}}
+
{{#set: common name=Glycine oxidase}}
{{#set: gene associated=B471_RS0104100}}
+
{{#set: gene associated=B471_RS0117705}}
{{#set: in pathway=map01100|map01130|map01110|map00900}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=aferrooxidans|bsubtilis}}
 

Revision as of 23:41, 20 March 2018

Reaction GLYO1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycine oxidase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 O2 O2[c] + 1.0 Glycine[c] + 1.0 H2O H2O[c] => 1.0 Ammonium[c] + 1.0 Glyoxylate[c] + 1.0 Hydrogen peroxide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.4.3.19
  • BioCyc : META:1.4.3.19-RXN
  • MetaNetX (MNX) Equation : MNXR100352
  • RHEA:
  • Reactome : REACT_R-BTA-389821
  • KEGG Reaction : R00366