Difference between revisions of "B471 RS0108585"

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(→‎Automatic reconstruction with AuReMe)
(Created page with "Category:Gene == Gene B471_RS0108585 == * Synonym(s): == Reactions associated == * Reaction: UAGPT3 ** Source: orthology-cljungdahlii * Reaction: UGT1_BS ** S...")
 
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== CUTIGEM description ==
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[[Category:Gene]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Gene B471_RS0108585 ==
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Model summary: [[MEDIA:SCutipay_final.txt|summary]]
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* Synonym(s):
  
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Download '''AuReMe''' Input/Output [https://mybox.inria.fr/f/dd66702d2a/?raw=1 data]
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== Reactions associated ==
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* Reaction: [[UAGPT3]]
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The automatic reconstruction of ''S_thermosulfidooxidans_str_Cutipay'' results to a Genome scale [[MEDIA:SCutipay_lvl3.xml|Model]] containing 1067 reactions, 854 metabolites, 541 genes and 108 pathways. This GeM was obtained based on the following sources:
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** Source: [[orthology-cljungdahlii]]
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* Based on orthology data:
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* Reaction: [[UGT1_BS]]
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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** Source: [[orthology-bsubtilis]]
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*** From template ''AFERROOXIDANS'' creation of a metabolic network containing: 220 reactions
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* Reaction: [[UGT2_BS]]
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*** From template ''CLJUNGDAHLII'' creation of a metabolic network containing: 338 reactions
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** Source: [[orthology-bsubtilis]]
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*** From template ''BSUBTILIS'' creation of a metabolic network containing: 459 reactions
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* Reaction: [[UGT_BS]]
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* Based on expertise:
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** Source: [[orthology-bsubtilis]]
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*** 405 reaction(s) added
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== Pathways associated ==
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* [[map01100]]
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[[FILE:venn.png|frameless|border]]
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* [[map00550]]
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== External links  ==
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== Collaborative curation ==  
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{{#set: reaction associated=UAGPT3|UGT1_BS|UGT2_BS|UGT_BS}}
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* Suggest reactions to add or remove:
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{{#set: pathway associated=map01100|map00550}}
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
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* Suggest new reactions to create and add:
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** Download this [[MEDIA:Reaction_creator.csv|form]]
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
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* Send the filled form(s) to: gem-aureme@irisa.fr
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Latest revision as of 15:01, 21 March 2018

Gene B471_RS0108585

  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=B471_RS0108585&oldid=5854"