Difference between revisions of "Map00300"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-isopropylmalate synthase * Synonym(...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300] == * common_name: ** Lysine biosynthesis * Synonym(s): == Reaction(s) found == ''...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Lysine biosynthesis
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* common name:
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** 2-isopropylmalate synthase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''34''' reactions in the full pathway
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** 1.0 [[3mob]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[accoa]][c] '''=>''' 1.0 [[coa]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[3c3hmp]][c]
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* [[ASAD]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 3-Methyl-2-oxobutanoate[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Acetyl-CoA[c] '''=>''' 1.0 Coenzyme A[c] '''+''' 1.0 H+[c] '''+''' 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c]
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*** [[B471_RS0100620]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
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* [[B471_RS21670]]
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*** [[orthology-aferrooxidans]]
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** [[pantograph]]-[[cljungdahlii]]
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* [[ASPK]]
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** [[pantograph]]-[[bsubtilis]]
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** 2 associated gene(s):
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== Pathways  ==
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*** [[B471_RS0100615]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[B471_RS0107565]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[orthology-cljungdahlii]]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
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*** [[orthology-aferrooxidans]]
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** '''15''' reactions found over '''49''' reactions in the full pathway
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* [[DAPDC]]
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* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
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** 1 associated gene(s):
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** '''26''' reactions found over '''80''' reactions in the full pathway
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*** [[B471_RS0101130]]
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* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
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** 3 reconstruction source(s) associated:
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** '''22''' reactions found over '''163''' reactions in the full pathway
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*** [[orthology-cljungdahlii]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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*** [[orthology-bsubtilis]]
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** '''78''' reactions found over '''228''' reactions in the full pathway
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*** [[orthology-aferrooxidans]]
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== Reconstruction information  ==
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* [[DAPE]]
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* Category: [[orthology]]
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** 1 associated gene(s):
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** Source: [[orthology-cljungdahlii]]
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*** [[B471_RS0109300]]
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*** Tool: [[pantograph]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-bsubtilis]]
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*** [[orthology-cljungdahlii]]
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*** Tool: [[pantograph]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[HSDy]]
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** 1 associated gene(s):
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*** [[B471_RS23515]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[SDPDS]]
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** 2 associated gene(s):
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*** [[B471_RS0118440]]
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*** [[B471_RS0119375]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[SDPTA]]
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** 1 associated gene(s):
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*** [[B471_RS0117530]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[THDPS]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[UAAGDS]]
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** 2 associated gene(s):
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*** [[B471_RS0102460]]
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*** [[B471_RS0108970]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[UGMDDS]]
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** 1 associated gene(s):
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*** [[B471_RS21735]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/AASAD2 AASAD2]
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* [http://bigg.ucsd.edu/universal/reactions/AASAD3 AASAD3]
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* [http://bigg.ucsd.edu/universal/reactions/AASAD3m AASAD3m]
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* [http://bigg.ucsd.edu/universal/reactions/AATA AATA]
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* [http://bigg.ucsd.edu/universal/reactions/ADAPAT ADAPAT]
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* [http://bigg.ucsd.edu/universal/reactions/ARAT ARAT]
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* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
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* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
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* [http://bigg.ucsd.edu/universal/reactions/CH2ACH CH2ACH]
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* [http://bigg.ucsd.edu/universal/reactions/CH3ACH CH3ACH]
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* [http://bigg.ucsd.edu/universal/reactions/DAPDA DAPDA]
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* [http://bigg.ucsd.edu/universal/reactions/HICITDm HICITDm]
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* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
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* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
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* [http://bigg.ucsd.edu/universal/reactions/LDAPAT LDAPAT]
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* [http://bigg.ucsd.edu/universal/reactions/OXAGm OXAGm]
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* [http://bigg.ucsd.edu/universal/reactions/RH2CD RH2CD]
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* [http://bigg.ucsd.edu/universal/reactions/RH3CD RH3CD]
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* [http://bigg.ucsd.edu/universal/reactions/SACCD1 SACCD1]
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* [http://bigg.ucsd.edu/universal/reactions/SACCD2 SACCD2]
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* [http://bigg.ucsd.edu/universal/reactions/SACCD4m SACCD4m]
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* [http://bigg.ucsd.edu/universal/reactions/THPAT THPAT]
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* [http://bigg.ucsd.edu/universal/reactions/UGLDDS1 UGLDDS1]
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* [http://bigg.ucsd.edu/universal/reactions/UGLDDS2 UGLDDS2]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common_name=Lysine biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
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{{#set: reaction found=10}}
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* EC Number : 2.3.3.13
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{{#set: total reaction=34}}
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* MetaNetX (MNX) Equation : MNXR100879
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{{#set: completion rate=29.0}}
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* KEGG Reaction : R01213
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* BioCyc : META:2-ISOPROPYLMALATESYN-RXN
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-isopropylmalate synthase}}
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{{#set: gene associated=B471_RS21670}}
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{{#set: in pathway=map01100|map01110|map00290|map01210|map00620|map01230}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 15:14, 21 March 2018

Pathway map00300

  • common_name:
    • Lysine biosynthesis
  • Synonym(s):

Reaction(s) found

10 reactions found over 34 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00300&oldid=6410"