Difference between revisions of "Map00640"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/THRAi_CUT THRAi_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640] == * common_name: ** Propanoate metabolism * Synonym(s): == Reaction(s) found ==...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/THRAi_CUT THRAi_CUT] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640] ==
−
* direction:
+
* common_name:
−
** REVERSIBLE
+
** Propanoate metabolism
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''15''' reactions found over '''143''' reactions in the full pathway
−
** 1.0 [[thr__L]][c] '''<=>''' 1.0 [[acald]][c] '''+''' 1.0 [[gly]][c]
+
* [[ABTA]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 L-Threonine[c] '''<=>''' 1.0 Acetaldehyde[c] '''+''' 1.0 Glycine[c]
+
*** [[B471_RS0110025]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-cljungdahlii]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-bsubtilis]]
−
* [[B471_RS0102175]]
+
* [[ACACT1r]]
−
** MANUAL
+
** 1 associated gene(s):
−
== Pathways  ==
+
*** [[B471_RS0105350]]
−
== Reconstruction information  ==
+
** 1 reconstruction source(s) associated:
−
* [[manual]]:
+
*** [[orthology-bsubtilis]]
−
** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
* [[ACACT2r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT3r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT4r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT7r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACCOAC]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0108400]]
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0101860]]
 +
*** [[B471_RS0108925]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACS]]
 +
** 3 associated gene(s):
 +
*** [[B471_RS0108000]]
 +
*** [[B471_RS0102585]]
 +
*** [[B471_RS0101560]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACS2]]
 +
** 3 associated gene(s):
 +
*** [[B471_RS0108000]]
 +
*** [[B471_RS0101560]]
 +
*** [[B471_RS0102585]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH9ir]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115580]]
 +
*** [[B471_RS0110785]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MCITL2]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101440]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MCITS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101430]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[PPCOAC]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0108400]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[SUCOAS]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108670]]
 +
*** [[B471_RS0108675]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/13PPDH 13PPDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/2HBO 2HBO]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HBCOAHL 3HBCOAHL]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HBCOAHLm 3HBCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HPPD 3HPPD]
 +
* [http://bigg.ucsd.edu/universal/reactions/4M2OPLOXRD 4M2OPLOXRD]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABTArm ABTArm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACCT ACACCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOALm ACCOALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADCim ADCim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD20y ALCD20y]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD21_D ALCD21_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD3ir ALCD3ir]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALR2 ALR2]
 +
* [http://bigg.ucsd.edu/universal/reactions/APAT2rm APAT2rm]
 +
* [http://bigg.ucsd.edu/universal/reactions/APATr APATr]
 +
* [http://bigg.ucsd.edu/universal/reactions/APPTh APPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/APPTm APPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BNORh BNORh]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTCOARx BTCOARx]
 +
* [http://bigg.ucsd.edu/universal/reactions/BUTCT BUTCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHRT_2mbcoa DHRT_2mbcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHRT_ivcoa DHRT_ivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCDx GLYCDx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBH HIBH]
 +
* [http://bigg.ucsd.edu/universal/reactions/HXCT HXCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ITCOAL1m ITCOAL1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/LALDO3 LALDO3]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCARR LCARR]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCARS LCARS]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCD LCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_L LDH_L]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCD MCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCDC MCDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCDm MCDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCDp MCDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCITD MCITD]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCITL2m MCITL2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCITLm MCITLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCITSm MCITSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
 +
* [http://bigg.ucsd.edu/universal/reactions/MGSA MGSA]
 +
* [http://bigg.ucsd.edu/universal/reactions/MICITDr MICITDr]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMCD MMCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMCDm MMCDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMCDp MMCDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD1 MMSAD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD1m MMSAD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD2 MMSAD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD3 MMSAD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD3m MMSAD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSDH MMSDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMTSAO MMTSAO]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD MOD]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD_3mhtpp MOD_3mhtpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD_3mop MOD_3mop]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD_4mop MOD_4mop]
 +
* [http://bigg.ucsd.edu/universal/reactions/OBTFL OBTFL]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCDOR OCDOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFL PFL]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPACOALh PPACOALh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPACOALm PPACOALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPAKr PPAKr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCSCT PPCSCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPDD PPDD]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCOAS1m SUCOAS1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
{{#set: common_name=Propanoate metabolism}}
−
{{#set: gene associated=B471_RS0102175}}
+
{{#set: reaction found=15}}
−
{{#set: in pathway=}}
+
{{#set: total reaction=143}}
−
{{#set: reconstruction category=manual}}
+
{{#set: completion rate=10.0}}
−
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+

Latest revision as of 15:15, 21 March 2018

Pathway map00640

  • common_name:
    • Propanoate metabolism
  • Synonym(s):

Reaction(s) found

15 reactions found over 143 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00640&oldid=6434"