Difference between revisions of "Map00310"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/BTS4 BTS4] == * direction: ** LEFT-TO-RIGHT * common name: ** Biotin synthase * Synonym(s): == Rea...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310] == * common_name: ** Lysine degradation * Synonym(s): == Reaction(s) found == '''...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/BTS4 BTS4] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Lysine degradation
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* common name:
+
−
** Biotin synthase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''12''' reactions found over '''138''' reactions in the full pathway
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** 1.0 [[dtbt]][c] '''+''' 1.0 [[s]][c] '''+''' 1.0 [[amet]][c] '''=>''' 1.0 [[dad_5]][c] '''+''' 1.0 [[met__L]][c] '''+''' 1.0 [[btn]][c] '''+''' 1.0 [[h]][c]
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* [[ABUTD]]
−
* With common name(s):
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** 2 associated gene(s):
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** 1.0 Dethiobiotin[c] '''+''' 1.0 Sulfur[c] '''+''' 1.0 S-Adenosyl-L-methionine[c] '''=>''' 1.0 5'-Deoxyadenosine[c] '''+''' 1.0 L-Methionine[c] '''+''' 1.0 Biotin[c] '''+''' 1.0 H+[c]
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*** [[B471_RS0119455]]
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*** [[B471_RS0115620]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-bsubtilis]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[ACACT1r]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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** 1 associated gene(s):
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* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
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*** [[B471_RS0105350]]
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** '''28''' reactions found over '''67''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[orthology-bsubtilis]]
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* Category: [[manual]]
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* [[ACACT2r]]
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** Source: [[manual-reaction_to_add_delete]]
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** 2 associated gene(s):
−
*** Comment: [[reaction added from literature evidence or biological expertise]]
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*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT3r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT4r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT7r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACOAD1]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108385]]
 +
*** [[B471_RS0110365]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[ECOAH9ir]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115580]]
 +
*** [[B471_RS0110785]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[HACD1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[LYSDC]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS21410]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/1PPDCRc 1PPDCRc]
 +
* [http://bigg.ucsd.edu/universal/reactions/1PPDCRp 1PPDCRp]
 +
* [http://bigg.ucsd.edu/universal/reactions/2OXOADOXm 2OXOADOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AABTN AABTN]
 +
* [http://bigg.ucsd.edu/universal/reactions/AASAD2 AASAD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/AASAD3 AASAD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/AASAD3m AASAD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATA AATA]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDH AKGDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDHe2r AKGDHe2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDa AKGDa]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDam AKGDam]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDb AKGDb]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDbm AKGDbm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDm AKGDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALATA_D ALATA_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOXHEXCYCL AOXHEXCYCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/APENTAMAH APENTAMAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/APTNAT APTNAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/BBHOX BBHOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHMT3 GHMT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHMT3m GHMT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLCOAS GLCOAS]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLCOASYNT GLCOASYNT]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPCOXc LPCOXc]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPCOXp LPCOXp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LYSAM LYSAM]
 +
* [http://bigg.ucsd.edu/universal/reactions/LYSMO LYSMO]
 +
* [http://bigg.ucsd.edu/universal/reactions/LYSMTF3n LYSMTF3n]
 +
* [http://bigg.ucsd.edu/universal/reactions/LYSOXp LYSOXp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LYSRC LYSRC]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXOADLR OXOADLR]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXPTNDH OXPTNDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPD2CSPp PPD2CSPp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SACCD1 SACCD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/SACCD2 SACCD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/SACCD3m SACCD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SACCD4m SACCD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/TMABADH TMABADH]
 +
* [http://bigg.ucsd.edu/universal/reactions/TMLYSOX TMLYSOX]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR96343
+
{{#set: common_name=Lysine degradation}}
−
* EC Number : 2.8.1.6
+
{{#set: reaction found=12}}
−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=138}}
−
{{#set: common name=Biotin synthase}}
+
{{#set: completion rate=9.0}}
−
{{#set: in pathway=map01100|map00780}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=manual-reaction_to_add_delete}}
+
−
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
+

Latest revision as of 15:15, 21 March 2018

Pathway map00310

  • common_name:
    • Lysine degradation
  • Synonym(s):

Reaction(s) found

12 reactions found over 138 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00310&oldid=6459"