Difference between revisions of "Map00620"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PDX5PO2 PDX5PO2] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxine 5'-phosphate oxidase...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] == * common_name: ** Pyruvate metabolism * Synonym(s): == Reaction(s) found == ''...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PDX5PO2 PDX5PO2] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Pyruvate metabolism
−
* common name:
+
−
** Pyridoxine 5'-phosphate oxidase (anaerboic
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''22''' reactions found over '''163''' reactions in the full pathway
−
** 1.0 [[nad]][c] '''+''' 1.0 [[pdx5p]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[pydx5p]][c]
+
* [[ABUTD]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Pyridoxine 5'-phosphate[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 Pyridoxal 5'-phosphate[c]
+
*** [[B471_RS0119455]]
−
 
+
*** [[B471_RS0115620]]
−
== Genes associated with this reaction  ==
+
** 1 reconstruction source(s) associated:
−
== Pathways  ==
+
*** [[orthology-bsubtilis]]
−
== Reconstruction information  ==
+
* [[ACACT1r]]
−
* Category: [[manual]]
+
** 1 associated gene(s):
−
** Source: [[manual-reaction_to_add_delete]]
+
*** [[B471_RS0105350]]
−
*** Comment: [[reaction added from literature evidence or biological expertise]]
+
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT2r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT3r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT4r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT7r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACALD]]
 +
** 5 associated gene(s):
 +
*** [[B471_RS0100095]]
 +
*** [[B471_RS0110020]]
 +
*** [[B471_RS0119455]]
 +
*** [[B471_RS0113260]]
 +
*** [[B471_RS0115620]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[ACCOAC]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0108400]]
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0101860]]
 +
*** [[B471_RS0108925]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACS]]
 +
** 3 associated gene(s):
 +
*** [[B471_RS0108000]]
 +
*** [[B471_RS0102585]]
 +
*** [[B471_RS0101560]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ALDD2x]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115620]]
 +
*** [[B471_RS0119455]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[FUM]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0102435]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
 +
* [[IPPS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS21670]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[LCADi]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115620]]
 +
*** [[B471_RS0119455]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MALS]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[MDH]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0108660]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ME1]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101695]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[ME2]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0108665]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[PC]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0103275]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[PDH]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0115310]]
 +
*** [[B471_RS0115315]]
 +
*** [[B471_RS0110920]]
 +
*** [[B471_RS0110905]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
 +
* [[PPDK]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0118720]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PYK]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109145]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2HBO 2HBO]
 +
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAH ACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAHim ACOAHim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACPh ACPh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACYP ACYP]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACYP_2 ACYP_2]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGPOP AGPOP]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGPOPm AGPOPm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD2xm ALDD2xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD2y ALDD2y]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD2ym ALDD2ym]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALR ALR]
 +
* [http://bigg.ucsd.edu/universal/reactions/APhi APhi]
 +
* [http://bigg.ucsd.edu/universal/reactions/DAPOP DAPOP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DMALRED DMALRED]
 +
* [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDx GLYCLTDx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDy GLYCLTDy]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYOX3 GLYOX3]
 +
* [http://bigg.ucsd.edu/universal/reactions/GTPOPm GTPOPm]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/LALDO2x LALDO2x]
 +
* [http://bigg.ucsd.edu/universal/reactions/LALDO3 LALDO3]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCADi_D LCADi_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCADi_Dm LCADi_Dm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_D LDH_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_L LDH_L]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDHm LDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/LO LO]
 +
* [http://bigg.ucsd.edu/universal/reactions/L_LACD2 L_LACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/L_LACD3 L_LACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/L_LACDcm L_LACDcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LacR LacR]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
 +
* [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOSDC MOSDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOX MOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OAADC OAADC]
 +
* [http://bigg.ucsd.edu/universal/reactions/OBTFL OBTFL]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHa PDHa]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHam1hi PDHam1hi]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHam1mi PDHam1mi]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHam2hi PDHam2hi]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHam2mi PDHam2mi]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHbr PDHbr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe2hr PDHe2hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe2r PDHe2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHm PDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PEPCKm PEPCKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFL PFL]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCSCT PPCSCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPS PPS]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYK2 PYK2]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYK3 PYK3]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYK4 PYK4]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYK5 PYK5]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYKf PYKf]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYKm PYKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR102437
+
{{#set: common_name=Pyruvate metabolism}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction found=22}}
−
{{#set: common name=Pyridoxine 5'-phosphate oxidase (anaerboic}}
+
{{#set: total reaction=163}}
−
{{#set: in pathway=}}
+
{{#set: completion rate=13.0}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=manual-reaction_to_add_delete}}
+
−
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
+

Latest revision as of 15:16, 21 March 2018

Pathway map00620

  • common_name:
    • Pyruvate metabolism
  • Synonym(s):

Reaction(s) found

22 reactions found over 163 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00620&oldid=6506"