Difference between revisions of "GLYCL"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HISTD1_CUT HISTD1_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * Wit...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCL GLYCL] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine Cleavage System * Synonym(s...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/HISTD1_CUT HISTD1_CUT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCL GLYCL] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Glycine Cleavage System
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[histd]][c] '''+''' 1.0 [[nad]][c] '''=>''' 1.0 [[hist__L]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[gly]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[thf]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[nh4]][c] '''+''' 1.0 [[mlthf]][c] '''+''' 1.0 [[nadh]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Histidinol[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''=>''' 1.0 L-Histidinal[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c]
+
** 1.0 Glycine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Ammonium[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0118330]]
+
* Gene: [[B471_RS0101935]]
−
** missing_rxn_creator
+
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0101930]]
 +
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0101950]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0101940]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0101945]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0110920]]
 +
** Source: [[orthology-cljungdahlii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 +
** '''13''' reactions found over '''65''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-missing_rxn_creator]]
+
** Source: [[orthology-cljungdahlii]]
−
*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27758 27758]
 +
* MetaNetX (MNX) Equation : MNXR100330
 +
* KEGG Reaction : R01221
 +
* EC Number : 1.4.4.2
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=B471_RS0118330}}
+
{{#set: common name=Glycine Cleavage System}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=B471_RS0101935|B471_RS0101930|B471_RS0101950|B471_RS0101940|B471_RS0101945|B471_RS0110920}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map00670|map00260}}
−
{{#set: reconstruction source=manual-missing_rxn_creator}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
+
{{#set: reconstruction source=orthology-cljungdahlii|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:36, 21 March 2018

Reaction GLYCL

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycine Cleavage System
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Glycine[c] + 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 5,6,7,8-Tetrahydrofolate[c] => 1.0 CO2 CO2[c] + 1.0 Ammonium[c] + 1.0 5,10-Methylenetetrahydrofolate[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR100330
  • KEGG Reaction : R01221
  • EC Number : 1.4.4.2




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