Difference between revisions of "NTD10"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP1Aex MCTP1Aex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein crosslinking transpept...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD10 NTD10] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (XMP) * Synonym(s):...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP1Aex MCTP1Aex] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD10 NTD10] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)
+
** 5'-nucleotidase (XMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[murein5p5p]][e] '''=>''' 1.0 [[ala__D]][e] '''+''' 1.0 [[murein5px4p]][e]
+
** 1.0 [[xmp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[xtsn]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[e] '''=>''' 1.0 D-Alanine[e] '''+''' 1.0 Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)[e]
+
** 1.0 Xanthosine 5'-phosphate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Xanthosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0107545]]
+
* Gene: [[B471_RS0110685]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
−
* [[B471_RS0109660]]
+
−
** [[pantograph]]-[[cljungdahlii]]
+
−
* [[B471_RS0113655]]
+
−
** [[pantograph]]-[[cljungdahlii]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''68''' reactions found over '''244''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''64''' reactions found over '''298''' reactions in the full pathway
 +
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
 +
** '''17''' reactions found over '''97''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101426
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28530 28530]
 +
* EC Number : 3.1.3.5
 +
* MetaNetX (MNX) Equation : MNXR102029
 +
* KEGG Reaction : R02719
 +
* BioCyc : META:XMPXAN-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)}}
+
{{#set: common name=5'-nucleotidase (XMP)}}
−
{{#set: gene associated=B471_RS0107545|B471_RS0109660|B471_RS0113655}}
+
{{#set: gene associated=B471_RS0110685}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map00240|map01100|map01110|map00230|map00760}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-cljungdahlii}}
+
{{#set: reconstruction source=orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:37, 21 March 2018

Reaction NTD10

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase (XMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Xanthosine 5'-phosphate[c] + 1.0 H2O H2O[c] => 1.0 Phosphate[c] + 1.0 Xanthosine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 3.1.3.5
  • MetaNetX (MNX) Equation : MNXR102029
  • KEGG Reaction : R02719
  • BioCyc : META:XMPXAN-RXN




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