Difference between revisions of "ASPTA"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00281 map00281] == * common_name: ** Geraniol degradation * Synonym(s): == Reaction(s) found == '...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ASPTA ASPTA] == * direction: ** REVERSIBLE * common name: ** Aspartate transaminase * Synonym(s):...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00281 map00281] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ASPTA ASPTA] ==
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* common_name:
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* direction:
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** Geraniol degradation
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** REVERSIBLE
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* common name:
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** Aspartate transaminase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''56''' reactions in the full pathway
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* With identifiers:
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* [[ECOAH9ir]]
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** 1.0 [[asp__L]][c] '''+''' 1.0 [[akg]][c] '''<=>''' 1.0 [[glu__L]][c] '''+''' 1.0 [[oaa]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[B471_RS0115580]]
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** 1.0 L-Aspartate[c] '''+''' 1.0 2-Oxoglutarate[c] '''<=>''' 1.0 L-Glutamate[c] '''+''' 1.0 Oxaloacetate[c]
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*** [[B471_RS0110785]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-bsubtilis]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[HACD1]]
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* Gene: [[B471_RS0109180]]
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** 0 associated gene:
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** Source: [[orthology-cljungdahlii]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-bsubtilis]]
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*** [[manual-reaction_to_add_delete]]
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** Source: [[orthology-aferrooxidans]]
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* [[HMGL]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[B471_RS0108405]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
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*** [[orthology-bsubtilis]]
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** '''13''' reactions found over '''65''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
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** '''101''' reactions found over '''715''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
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* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
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* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
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** '''26''' reactions found over '''80''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
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* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
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** '''24''' reactions found over '''135''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
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* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
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** '''51''' reactions found over '''220''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
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* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
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* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
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** '''19''' reactions found over '''149''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
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** '''78''' reactions found over '''228''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
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* [[map00950]]: [http://www.genome.jp/dbget-bin/www_bget?map00950 map00950]
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* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
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** '''2''' reactions found over '''33''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
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* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
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* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
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** '''22''' reactions found over '''93''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
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* [[map00360]]: [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
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* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
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** '''7''' reactions found over '''109''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
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* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
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* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
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** '''18''' reactions found over '''71''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
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* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
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* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
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** '''6''' reactions found over '''102''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
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* [[map00960]]: [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960]
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* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
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** '''4''' reactions found over '''27''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
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** '''148''' reactions found over '''694''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
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* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
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* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
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** '''17''' reactions found over '''59''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
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* [[map00401]]: [http://www.genome.jp/dbget-bin/www_bget?map00401 map00401]
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* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
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** '''3''' reactions found over '''17''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
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== Reconstruction information  ==
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* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
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* Category: [[orthology]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
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** Source: [[orthology-cljungdahlii]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
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*** Tool: [[pantograph]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
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** Source: [[orthology-bsubtilis]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
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*** Tool: [[pantograph]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
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** Source: [[orthology-aferrooxidans]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
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*** Tool: [[pantograph]]
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* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
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* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
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* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
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* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
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* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
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* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
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* [http://bigg.ucsd.edu/universal/reactions/HMGL_1 HMGL_1]
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* [http://bigg.ucsd.edu/universal/reactions/HMGLm HMGLm]
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* [http://bigg.ucsd.edu/universal/reactions/HMGLx HMGLx]
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* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
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* [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
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* [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
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* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
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* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Geraniol degradation}}
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* EC Number : 2.6.1.1
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{{#set: reaction found=3}}
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* BioCyc : META:ASPAMINOTRANS-RXN
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{{#set: total reaction=56}}
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* MetaNetX (MNX) Equation : MNXR96079
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{{#set: completion rate=5.0}}
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
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* Reactome : REACT_R-ATH-70596
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* KEGG Reaction : R00355
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Aspartate transaminase}}
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{{#set: gene associated=B471_RS0109180}}
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{{#set: in pathway=map01100|map00220|map01110|map01120|map01210|map00270|map01200|map00330|map01230|map00950|map00250|map00360|map00710|map00350|map00960|map01130|map00400|map00401}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:37, 21 March 2018

Reaction ASPTA

  • direction:
    • REVERSIBLE
  • common name:
    • Aspartate transaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Aspartate[c] + 1.0 2-Oxoglutarate[c] <=> 1.0 L-Glutamate[c] + 1.0 Oxaloacetate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 2.6.1.1
  • BioCyc : META:ASPAMINOTRANS-RXN
  • MetaNetX (MNX) Equation : MNXR96079
  • RHEA:
  • Reactome : REACT_R-ATH-70596
  • KEGG Reaction : R00355




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