Difference between revisions of "PYRt2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinyl-diaminopimelate desuccinyl...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PYRt2 PYRt2] == * direction: ** REVERSIBLE * common name: ** Pyruvate transport in via proton sympo...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PYRt2 PYRt2] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Succinyl-diaminopimelate desuccinylase
+
** Pyruvate transport in via proton symport
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[sl26da]][c] '''=>''' 1.0 [[succ]][c] '''+''' 1.0 [[26dap_LL]][c]
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** 1.0 [[pyr]][e] '''+''' 1.0 [[h]][e] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[pyr]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] '''=>''' 1.0 Succinate[c] '''+''' 1.0 LL-2,6-Diaminoheptanedioate[c]
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** 1.0 Pyruvate[e] '''+''' 1.0 H+[e] '''<=>''' 1.0 H+[c] '''+''' 1.0 Pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[B471_RS0118440]]
 
−
** [[pantograph]]-[[bsubtilis]]
 
−
* [[B471_RS0119375]]
 
−
** [[pantograph]]-[[aferrooxidans]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''101''' reactions found over '''715''' reactions in the full pathway
 
−
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 
−
** '''10''' reactions found over '''34''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''78''' reactions found over '''228''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
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** Source: [[manual-reaction_to_add_delete]]
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*** [[aferrooxidans]]
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*** Comment: [[reaction added from literature evidence or biological expertise]]
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*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* Reactome : REACT_R-GGA-372359
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22608 22608]
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* MetaNetX (MNX) Equation : MNXR103385
−
* BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
+
{{#set: direction=REVERSIBLE}}
−
* MetaNetX (MNX) Equation : MNXR104300
+
{{#set: common name=Pyruvate transport in via proton symport}}
−
* KEGG Reaction : R02734
+
{{#set: in pathway=}}
−
* EC Number : 3.5.1.18
+
{{#set: reconstruction category=manual}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reconstruction source=manual-reaction_to_add_delete}}
−
{{#set: common name=Succinyl-diaminopimelate desuccinylase}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
−
{{#set: gene associated=B471_RS0118440|B471_RS0119375}}
+
−
{{#set: in pathway=map01100|map01120|map00300|map01230}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aferrooxidans|bsubtilis}}
+

Latest revision as of 16:38, 21 March 2018

Reaction PYRt2

  • direction:
    • REVERSIBLE
  • common name:
    • Pyruvate transport in via proton symport
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 pyr[e] + 1.0 h[e] <=> 1.0 h[c] + 1.0 pyr[c]
  • With common name(s):
    • 1.0 Pyruvate[e] + 1.0 H+[e] <=> 1.0 H+[c] + 1.0 Pyruvate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • Reactome : REACT_R-GGA-372359
  • MetaNetX (MNX) Equation : MNXR103385




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