Difference between revisions of "DCYTD"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SSALx SSALx] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinate-semialdehyde dehydrogenas...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DCYTD DCYTD] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxycytidine deaminase * Synonym(s...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SSALx SSALx] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DCYTD DCYTD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Succinate-semialdehyde dehydrogenase (NAD)
+
** Deoxycytidine deaminase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[sucsal]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[succ]][c] '''+''' 2.0 [[h]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[dcyt]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[duri]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Succinic semialdehyde[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 Succinate[c] '''+''' 2.0 H+[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 Deoxycytidine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Deoxyuridine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0100390]]
+
* Gene: [[B471_RS0110870]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0118750]]
 +
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''68''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
** '''22''' reactions found over '''72''' reactions in the full pathway
−
* [[map00650]]: [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650]
+
−
** '''21''' reactions found over '''156''' reactions in the full pathway
+
−
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
+
−
** '''17''' reactions found over '''97''' reactions in the full pathway
+
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
−
* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
+
−
** '''6''' reactions found over '''102''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[cljungdahlii]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.2.1.16
+
* EC Number : 3.5.4.5
−
* BioCyc : META:SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
+
* BioCyc : META:CYTIDEAM-RXN
−
* MetaNetX (MNX) Equation : MNXR104540
+
* MetaNetX (MNX) Equation : MNXR97207
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13433 13433]
−
* Reactome : REACT_R-ATH-888548
+
* Reactome : REACT_R-BTA-73608
−
* KEGG Reaction : R00713
+
* KEGG Reaction : R02485
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Succinate-semialdehyde dehydrogenase (NAD)}}
+
{{#set: common name=Deoxycytidine deaminase}}
−
{{#set: gene associated=B471_RS0100390}}
+
{{#set: gene associated=B471_RS0110870|B471_RS0118750}}
−
{{#set: in pathway=map01100|map01120|map00650|map00760|map00250|map00350}}
+
{{#set: in pathway=map00240|map01100|map00983}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=cljungdahlii}}
 

Latest revision as of 15:39, 21 March 2018

Reaction DCYTD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Deoxycytidine deaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Deoxycytidine[c] + 1.0 H+[c] => 1.0 Ammonium[c] + 1.0 Deoxyuridine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 3.5.4.5
  • BioCyc : META:CYTIDEAM-RXN
  • MetaNetX (MNX) Equation : MNXR97207
  • RHEA:
  • Reactome : REACT_R-BTA-73608
  • KEGG Reaction : R02485




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