Difference between revisions of "NTD6"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCTO1 GLYCTO1] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycolate oxidase * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD6 NTD6] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (dAMP) * Synonym(s):...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCTO1 GLYCTO1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD6 NTD6] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycolate oxidase
+
** 5'-nucleotidase (dAMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glyclt]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[h2o2]][c] '''+''' 1.0 [[glx]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[damp]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[dad_2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glycolate C2H3O3[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 Hydrogen peroxide[c] '''+''' 1.0 Glyoxylate[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 DAMP C10H12N5O6P[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Deoxyadenosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0100380]]
+
* Gene: [[B471_RS0110685]]
−
** [[pantograph]]-[[bsubtilis]]
+
** Source: [[orthology-bsubtilis]]
−
** [[pantograph]]-[[aferrooxidans]]
+
−
* [[B471_RS0100405]]
+
−
** [[pantograph]]-[[aferrooxidans]]
+
−
* [[B471_RS21905]]
+
−
** [[pantograph]]-[[bsubtilis]]
+
−
* [[B471_RS21575]]
+
−
** [[pantograph]]-[[bsubtilis]]
+
−
** [[pantograph]]-[[aferrooxidans]]
+
−
* [[B471_RS0103425]]
+
−
** [[pantograph]]-[[bsubtilis]]
+
−
* [[B471_RS0100385]]
+
−
** [[pantograph]]-[[aferrooxidans]]
+
−
* [[B471_RS23835]]
+
−
** [[pantograph]]-[[bsubtilis]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''68''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''23''' reactions found over '''129''' reactions in the full pathway
+
** '''64''' reactions found over '''298''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
−
** '''51''' reactions found over '''220''' reactions in the full pathway
+
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''148''' reactions found over '''694''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-bsubtilis]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.1.3.15
 
−
* BioCyc : META:RXN-969
 
−
* MetaNetX (MNX) Equation : MNXR100338
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25311 25311]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29371 29371]
−
* Reactome : REACT_R-ATH-389842
+
* EC Number : 3.1.3.5
−
* KEGG Reaction : R00475
+
* MetaNetX (MNX) Equation : MNXR102036
 +
* KEGG Reaction : R02088
 +
* BioCyc : META:RXN-14161
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glycolate oxidase}}
+
{{#set: common name=5'-nucleotidase (dAMP)}}
−
{{#set: gene associated=B471_RS0100380|B471_RS0100405|B471_RS21905|B471_RS21575|B471_RS0103425|B471_RS0100385|B471_RS23835}}
+
{{#set: gene associated=B471_RS0110685}}
−
{{#set: in pathway=map01100|map00630|map01110|map01120|map01200|map01130}}
+
{{#set: in pathway=map00240|map01100|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|bsubtilis}}
 

Latest revision as of 16:40, 21 March 2018

Reaction NTD6

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase (dAMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 DAMP C10H12N5O6P[c] => 1.0 Phosphate[c] + 1.0 Deoxyadenosine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 3.1.3.5
  • MetaNetX (MNX) Equation : MNXR102036
  • KEGG Reaction : R02088
  • BioCyc : META:RXN-14161




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