Difference between revisions of "LYSDC"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PAPSR_CUT PAPSR_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSDC LYSDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Lysine decarboxylase * Synonym(s):...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSDC LYSDC] == |
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
| + | * common name: | ||
| + | ** Lysine decarboxylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[h]][c] '''+''' 1.0 [[lys__L]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[15dap]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 H+[c] '''+''' 1.0 L-Lysine[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 1,5-Diaminopentane[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[B471_RS21410]] |
| − | ** | + | ** Source: [[orthology-cljungdahlii]] |
| + | ** Source: [[orthology-bsubtilis]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''471''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00960]]: [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960] | ||
| + | ** '''4''' reactions found over '''27''' reactions in the full pathway | ||
| + | * [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310] | ||
| + | ** '''12''' reactions found over '''138''' reactions in the full pathway | ||
| + | * [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110] | ||
| + | ** '''212''' reactions found over '''1054''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[ | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-cljungdahlii]] |
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-bsubtilis]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352] |
| − | {{#set: in pathway=}} | + | * EC Number : 4.1.1.18 |
| − | {{#set: reconstruction category= | + | * MetaNetX (MNX) Equation : MNXR101256 |
| − | {{#set: reconstruction source= | + | * KEGG Reaction : R00462 |
| + | * BioCyc : META:LYSDECARBOX-RXN | ||
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=Lysine decarboxylase}} | ||
| + | {{#set: gene associated=B471_RS21410}} | ||
| + | {{#set: in pathway=map01100|map00960|map00310|map01110}} | ||
| + | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}} | ||
| + | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 15:41, 21 March 2018
Contents
Reaction LYSDC
- direction:
- LEFT-TO-RIGHT
- common name:
- Lysine decarboxylase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 H+[c] + 1.0 L-Lysine[c] => 1.0 CO2 CO2[c] + 1.0 1,5-Diaminopentane[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: B471_RS21410
- Source: orthology-cljungdahlii
- Source: orthology-bsubtilis
Pathways
- map01100: map01100
- 471 reactions found over 2349 reactions in the full pathway
- map00960: map00960
- 4 reactions found over 27 reactions in the full pathway
- map00310: map00310
- 12 reactions found over 138 reactions in the full pathway
- map01110: map01110
- 212 reactions found over 1054 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-cljungdahlii
- Tool: pantograph
- Source: orthology-bsubtilis
- Tool: pantograph
- Source: orthology-cljungdahlii
External links
- RHEA:
- EC Number : 4.1.1.18
- MetaNetX (MNX) Equation : MNXR101256
- KEGG Reaction : R00462
- BioCyc : META:LYSDECARBOX-RXN
