Difference between revisions of "PDH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NADHI NADHI] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With identifi...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate dehydrogenase * Synonym(s): =...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/NADHI NADHI] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Pyruvate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[q8h2]][c] '''+''' 1.0 [[nad]][c] '''+''' 5.0 [[h]][e] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[q8]][c] '''+''' 6.0 [[h]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[pyr]][c] '''+''' 1.0 [[coa]][c] '''=>''' 1.0 [[accoa]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[nadh]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Ubiquinol-8[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 5.0 H+[e] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 Ubiquinone-8[c] '''+''' 6.0 H+[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Pyruvate[c] '''+''' 1.0 Coenzyme A[c] '''=>''' 1.0 Acetyl-CoA[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[B471_RS0115310]]
 +
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0115315]]
 +
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0110920]]
 +
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0110905]]
 +
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''22''' reactions found over '''163''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''20''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''10''' reactions found over '''70''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction from orthology templates not found by pantograph]]
+
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.2.1
 +
* BioCyc : META:PYRUVDEH-RXN
 +
* MetaNetX (MNX) Equation : MNXR102425
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
 +
* Reactome : REACT_R-ATH-71397
 +
* KEGG Reaction : R00209
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=Pyruvate dehydrogenase}}
−
{{#set: reconstruction category=manual}}
+
{{#set: gene associated=B471_RS0115310|B471_RS0115315|B471_RS0110920|B471_RS0110905}}
−
{{#set: reconstruction source=reaction from orthology templates not found by pantograph}}
+
{{#set: in pathway=map01100|map01110|map01120|map01200|map00620|map00010|map00020|map01130}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:43, 21 March 2018

Reaction PDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyruvate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Pyruvate[c] + 1.0 Coenzyme A[c] => 1.0 Acetyl-CoA[c] + 1.0 CO2 CO2[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.2.1
  • BioCyc : META:PYRUVDEH-RXN
  • MetaNetX (MNX) Equation : MNXR102425
  • RHEA:
  • Reactome : REACT_R-ATH-71397
  • KEGG Reaction : R00209




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