Difference between revisions of "SARCOX"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTK2 CYTK2] == * direction: ** REVERSIBLE * common name: ** Cytidylate kinase (dCMP) * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SARCOX SARCOX] == * direction: ** LEFT-TO-RIGHT * common name: ** Sarcosine oxidase * Synonym(s):...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTK2 CYTK2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SARCOX SARCOX] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Cytidylate kinase (dCMP)
+
** Sarcosine oxidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[dcmp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[dcdp]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[sarcs]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[gly]][c] '''+''' 1.0 [[fald]][c] '''+''' 1.0 [[h2o2]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 DCMP C9H12N3O7P[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 Sarcosine C3H7NO2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 Glycine[c] '''+''' 1.0 Formaldehyde[c] '''+''' 1.0 Hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0101025]]
+
* Gene: [[B471_RS0117705]]
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
** [[pantograph]]-[[bsubtilis]]
+
** [[pantograph]]-[[aferrooxidans]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
** '''68''' reactions found over '''244''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-bsubtilis]]
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
*** [[cljungdahlii]]
+
*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25094 25094]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13313 13313]
* BioCyc : META:RXN-7913
+
* EC Number : 1.5.3.1
* MetaNetX (MNX) Equation : MNXR97053
+
* MetaNetX (MNX) Equation : MNXR104272
* KEGG Reaction : R01665
+
* KEGG Reaction : R00610
* EC Number : 2.7.4.13
+
* BioCyc : META:SARCOX-RXN
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Cytidylate kinase (dCMP)}}
+
{{#set: common name=Sarcosine oxidase}}
{{#set: gene associated=B471_RS0101025}}
+
{{#set: gene associated=B471_RS0117705}}
{{#set: in pathway=map00240|map01100}}
+
{{#set: in pathway=map01100|map00260}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
 

Latest revision as of 15:44, 21 March 2018

Reaction SARCOX

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Sarcosine oxidase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Sarcosine C3H7NO2[c] + 1.0 H2O H2O[c] + 1.0 O2 O2[c] => 1.0 Glycine[c] + 1.0 Formaldehyde[c] + 1.0 Hydrogen peroxide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.5.3.1
  • MetaNetX (MNX) Equation : MNXR104272
  • KEGG Reaction : R00610
  • BioCyc : META:SARCOX-RXN