Difference between revisions of "PPM2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AOXSr2 AOXSr2] == * direction: ** LEFT-TO-RIGHT * common name: ** 8-amino-7-oxononanoate synthase *...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPM2 PPM2] == * direction: ** REVERSIBLE * common name: ** Phosphopentomutase 2 (deoxyribose) * Syn...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/AOXSr2 AOXSr2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PPM2 PPM2] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 8-amino-7-oxononanoate synthase
+
** Phosphopentomutase 2 (deoxyribose)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ala__L]][c] '''+''' 1.0 [[pimACP]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[ACP]][c] '''+''' 1.0 [[8aonn]][c]
+
** 1.0 [[2dr1p]][c] '''<=>''' 1.0 [[2dr5p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Alanine[c] '''+''' 1.0 Pimeloyl-[acyl-carrier protein][c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Acyl carrier protein[c] '''+''' 1.0 8-Amino-7-oxononanoate[c]
+
** 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[B471_RS22550]]
 +
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''20''' reactions found over '''69''' reactions in the full pathway
−
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''28''' reactions found over '''67''' reactions in the full pathway
+
** '''64''' reactions found over '''298''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction added from literature evidence or biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:RXN-11484
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR95855
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25205 25205]
−
* KEGG Reaction : R10124
+
* EC Number : 5.4.2.7
−
* EC Number : 2.3.1.47
+
* MetaNetX (MNX) Equation : MNXR103116
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R02749
−
{{#set: common name=8-amino-7-oxononanoate synthase}}
+
* BioCyc : META:D-PPENTOMUT-RXN
−
{{#set: in pathway=map01100|map00780|map01120}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=Phosphopentomutase 2 (deoxyribose)}}
−
{{#set: reconstruction source=reaction added from literature evidence or biological expertise}}
+
{{#set: gene associated=B471_RS22550}}
 +
{{#set: in pathway=map00030|map00230}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:45, 21 March 2018

Reaction PPM2

  • direction:
    • REVERSIBLE
  • common name:
    • Phosphopentomutase 2 (deoxyribose)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-Deoxy-D-ribose 1-phosphate[c] <=> 1.0 2-Deoxy-D-ribose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 5.4.2.7
  • MetaNetX (MNX) Equation : MNXR103116
  • KEGG Reaction : R02749
  • BioCyc : META:D-PPENTOMUT-RXN




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