Difference between revisions of "UPP3S"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MTHTHFSs MTHTHFSs] == * direction: ** LEFT-TO-RIGHT * common name: ** (2R,4S)-2-methyl-2,3,3,4-tetr...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UPP3S UPP3S] == * direction: ** LEFT-TO-RIGHT * common name: ** Uroporphyrinogen-III synthase * Syn...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/MTHTHFSs MTHTHFSs] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UPP3S UPP3S] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous)
+
** Uroporphyrinogen-III synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h2o]][c] '''+''' 1.0 [[mdhdhf]][c] '''=>''' 1.0 [[mththf]][c]
+
** 1.0 [[hmbil]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[uppg3]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H2O H2O[c] '''+''' 1.0 (2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one[c] '''=>''' 1.0 (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran[c]
+
** 1.0 Hydroxymethylbilane[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 Uroporphyrinogen III[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[B471_RS24310]]
 +
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00860]]: [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860]
 +
** '''23''' reactions found over '''106''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[manual]]:
+
* Category: [[orthology]]
** [[reaction added from literature evidence or biological expertise]]
+
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 4.2.1.75
 +
* BioCyc : META:UROGENIIISYN-RXN
 +
* MetaNetX (MNX) Equation : MNXR105139
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=35159 35159]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
* MetaNetX (MNX) Equation : MNXR101756
+
* Reactome : REACT_R-BTA-189488
* BioCyc : META:RXN-10017
+
* KEGG Reaction : R03165
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous)}}
+
{{#set: common name=Uroporphyrinogen-III synthase}}
{{#set: in pathway=}}
+
{{#set: gene associated=B471_RS24310}}
{{#set: reconstruction category=manual}}
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{{#set: in pathway=map01100|map01110|map00860|map01120}}
{{#set: reconstruction source=reaction added from literature evidence or biological expertise}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:46, 21 March 2018

Reaction UPP3S

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Uroporphyrinogen-III synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Hydroxymethylbilane[c] => 1.0 H2O H2O[c] + 1.0 Uroporphyrinogen III[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 4.2.1.75
  • BioCyc : META:UROGENIIISYN-RXN
  • MetaNetX (MNX) Equation : MNXR105139
  • RHEA:
  • Reactome : REACT_R-BTA-189488
  • KEGG Reaction : R03165