Difference between revisions of "IPMD"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACPPAT140 ACPPAT140] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-(acyl carrier protein)...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IPMD IPMD] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-isopropylmalate dehydrogenase * Syn...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/IPMD IPMD] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** 3-isopropylmalate dehydrogenase |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[nad]][c] '''+''' 1.0 [[3c2hmp]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[3c4mop]][c] '''+''' 1.0 [[h]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 3-Carboxy-2-hydroxy-4-methylpentanoate[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 3-Carboxy-4-methyl-2-oxopentanoate[c] '''+''' 1.0 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[B471_RS0108545]] | ||
| + | ** Source: [[orthology-cljungdahlii]] | ||
| + | ** Source: [[orthology-bsubtilis]] | ||
| + | ** Source: [[orthology-aferrooxidans]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210] | ||
| + | ** '''26''' reactions found over '''80''' reactions in the full pathway | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''471''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00660]]: [http://www.genome.jp/dbget-bin/www_bget?map00660 map00660] | ||
| + | ** '''5''' reactions found over '''21''' reactions in the full pathway | ||
| + | * [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110] | ||
| + | ** '''212''' reactions found over '''1054''' reactions in the full pathway | ||
| + | * [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290] | ||
| + | ** '''15''' reactions found over '''49''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[ | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-cljungdahlii]] |
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-bsubtilis]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-aferrooxidans]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | * MetaNetX (MNX) Equation : | + | * RHEA: |
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892] | ||
| + | * EC Number : 1.1.1.85 | ||
| + | * MetaNetX (MNX) Equation : MNXR100878 | ||
| + | * KEGG Reaction : R04426 | ||
| + | * BioCyc : META:3-ISOPROPYLMALDEHYDROG-RXN | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: common name= | + | {{#set: common name=3-isopropylmalate dehydrogenase}} |
| − | {{#set: in pathway=}} | + | {{#set: gene associated=B471_RS0108545}} |
| − | {{#set: reconstruction category= | + | {{#set: in pathway=map01210|map01100|map00660|map01110|map00290}} |
| − | {{#set: reconstruction source= | + | {{#set: reconstruction category=orthology}} |
| + | {{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}} | ||
| + | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 15:47, 21 March 2018
Contents
Reaction IPMD
- direction:
- LEFT-TO-RIGHT
- common name:
- 3-isopropylmalate dehydrogenase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 3-Carboxy-2-hydroxy-4-methylpentanoate[c] => 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 3-Carboxy-4-methyl-2-oxopentanoate[c] + 1.0 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: B471_RS0108545
- Source: orthology-cljungdahlii
- Source: orthology-bsubtilis
- Source: orthology-aferrooxidans
Pathways
- map01210: map01210
- 26 reactions found over 80 reactions in the full pathway
- map01100: map01100
- 471 reactions found over 2349 reactions in the full pathway
- map00660: map00660
- 5 reactions found over 21 reactions in the full pathway
- map01110: map01110
- 212 reactions found over 1054 reactions in the full pathway
- map00290: map00290
- 15 reactions found over 49 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-cljungdahlii
- Tool: pantograph
- Source: orthology-bsubtilis
- Tool: pantograph
- Source: orthology-aferrooxidans
- Tool: pantograph
- Source: orthology-cljungdahlii
External links
- RHEA:
- EC Number : 1.1.1.85
- MetaNetX (MNX) Equation : MNXR100878
- KEGG Reaction : R04426
- BioCyc : META:3-ISOPROPYLMALDEHYDROG-RXN
