Difference between revisions of "GLYCL"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYSabc CYSabc] == * direction: ** LEFT-TO-RIGHT * common name: ** L-cysteine transport via ABC syst...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCL GLYCL] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine Cleavage System * Synonym(s...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYSabc CYSabc] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCL GLYCL] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-cysteine transport via ABC system
+
** Glycine Cleavage System
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[cys__L]][e] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[cys__L]][c]
+
** 1.0 [[gly]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[thf]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[nh4]][c] '''+''' 1.0 [[mlthf]][c] '''+''' 1.0 [[nadh]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Cysteine[e] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 L-Cysteine[c]
+
** 1.0 Glycine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Ammonium[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[B471_RS0101935]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0101930]]
 +
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0101950]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0101940]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0101945]]
 +
** Source: [[orthology-cljungdahlii]]
 +
* Gene: [[B471_RS0110920]]
 +
** Source: [[orthology-cljungdahlii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 +
** '''13''' reactions found over '''65''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction added from literature evidence or biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29783#2 29783#2]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27758 27758]
−
* MetaNetX (MNX) Equation : MNXR97025
+
* MetaNetX (MNX) Equation : MNXR100330
−
* EC Number : 3.6.3.21
+
* KEGG Reaction : R01221
−
* BioCyc : META:TRANS-RXN-265
+
* EC Number : 1.4.4.2
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=L-cysteine transport via ABC system}}
+
{{#set: common name=Glycine Cleavage System}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=B471_RS0101935|B471_RS0101930|B471_RS0101950|B471_RS0101940|B471_RS0101945|B471_RS0110920}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map00670|map00260}}
−
{{#set: reconstruction source=reaction added from literature evidence or biological expertise}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:36, 21 March 2018

Reaction GLYCL

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycine Cleavage System
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Glycine[c] + 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 5,6,7,8-Tetrahydrofolate[c] => 1.0 CO2 CO2[c] + 1.0 Ammonium[c] + 1.0 5,10-Methylenetetrahydrofolate[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR100330
  • KEGG Reaction : R01221
  • EC Number : 1.4.4.2




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