Difference between revisions of "GLUR"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr_CUT PRAGSr_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * Wit...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUR GLUR] == * direction: ** REVERSIBLE * common name: ** Glutamate racemase * Synonym(s): == Rea...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr_CUT PRAGSr_CUT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUR GLUR] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** Glutamate racemase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[atp]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[pram]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[gar]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[glu__D]][c] '''<=>''' 1.0 [[glu__L]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 5-Phospho-beta-D-ribosylamine[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] '''+''' 1.0 H+[c]
+
** 1.0 D-Glutamate[c] '''<=>''' 1.0 L-Glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0105240]]
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* Gene: [[B471_RS0110265]]
** MANUAL
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** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00471]]: [http://www.genome.jp/dbget-bin/www_bget?map00471 map00471]
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[manual]]:
+
* Category: [[orthology]]
** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
{{#set: gene associated=B471_RS0105240}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12813 12813]
{{#set: in pathway=}}
+
* EC Number : 5.1.1.3
{{#set: reconstruction category=manual}}
+
* MetaNetX (MNX) Equation : MNXR100288
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+
* KEGG Reaction : R00260
 +
* BioCyc : META:GLUTRACE-RXN
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Glutamate racemase}}
 +
{{#set: gene associated=B471_RS0110265}}
 +
{{#set: in pathway=map01100|map00471}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:37, 21 March 2018

Reaction GLUR

  • direction:
    • REVERSIBLE
  • common name:
    • Glutamate racemase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Glutamate[c] <=> 1.0 L-Glutamate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 5.1.1.3
  • MetaNetX (MNX) Equation : MNXR100288
  • KEGG Reaction : R00260
  • BioCyc : META:GLUTRACE-RXN