Difference between revisions of "CBPS"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/thm thm] == * common name: ** Thiamin * Synonym(s): == Reaction(s) known to consume the comp...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CBPS CBPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Carbamoyl-phosphate synthase (glutami...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
[[Category:Metabolite]]
+
[[Category:Reaction]]
== Metabolite [http://bigg.ucsd.edu/universal/metabolites/thm thm] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CBPS CBPS] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Thiamin
+
** Carbamoyl-phosphate synthase (glutamine-hydrolysing)
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
* [[EX_thm]]
+
* With identifiers:
* [[THMt2]]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[gln__L]][c] '''+''' 1.0 [[hco3]][c] '''+''' 2.0 [[atp]][c] '''=>''' 2.0 [[h]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[cbp]][c] '''+''' 2.0 [[adp]][c]
* [[TMK]]
+
* With common name(s):
== Reaction(s) known to produce the compound ==
+
** 1.0 H2O H2O[c] '''+''' 1.0 L-Glutamine[c] '''+''' 1.0 Bicarbonate[c] '''+''' 2.0 ATP C10H12N5O13P3[c] '''=>''' 2.0 H+[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 Carbamoyl phosphate[c] '''+''' 2.0 ADP C10H12N5O10P2[c]
* [[THMt2]]
+
 
== Reaction(s) of unknown directionality ==
+
== Genes associated with this reaction  ==
* [[THMP_CUT]]
+
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[B471_RS0109105]]
 +
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0109100]]
 +
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 +
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''68''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
 +
** '''22''' reactions found over '''93''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
{{#set: common name=Thiamin}}
+
* RHEA:
{{#set: consumed by=EX_thm|THMt2|TMK}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18633 18633]
{{#set: produced by=THMt2}}
+
* EC Number : 6.3.5.5
{{#set: consumed or produced by=THMP_CUT}}
+
* MetaNetX (MNX) Equation : MNXR96485
 +
* KEGG Reaction : R00575
 +
* BioCyc : META:CARBPSYN-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Carbamoyl-phosphate synthase (glutamine-hydrolysing)}}
 +
{{#set: gene associated=B471_RS0109105|B471_RS0109100}}
 +
{{#set: in pathway=map01100|map00240|map00250}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:39, 21 March 2018

Reaction CBPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Carbamoyl-phosphate synthase (glutamine-hydrolysing)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 L-Glutamine[c] + 1.0 Bicarbonate[c] + 2.0 ATP C10H12N5O13P3[c] => 2.0 H+[c] + 1.0 Phosphate[c] + 1.0 L-Glutamate[c] + 1.0 Carbamoyl phosphate[c] + 2.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 6.3.5.5
  • MetaNetX (MNX) Equation : MNXR96485
  • KEGG Reaction : R00575
  • BioCyc : META:CARBPSYN-RXN