Difference between revisions of "EDD"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ECOAH2 ECOAH2] == * direction: ** REVERSIBLE * common name: ** 3-hydroxyacyl-CoA dehydratase (3-hyd...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EDD EDD] == * direction: ** LEFT-TO-RIGHT * common name: ** 6-phosphogluconate dehydratase * Synony...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ECOAH2 ECOAH2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/EDD EDD] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)
+
** 6-phosphogluconate dehydratase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[3hhcoa]][c] '''<=>''' 1.0 [[hx2coa]][c] '''+''' 1.0 [[h2o]][c]
+
** 1.0 [[6pgc]][c] '''=>''' 1.0 [[2ddg6p]][c] '''+''' 1.0 [[h2o]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 (S)-3-Hydroxyhexanoyl-CoA[c] '''<=>''' 1.0 Trans-Hex-2-enoyl-CoA[c] '''+''' 1.0 H2O H2O[c]
+
** 1.0 6-Phospho-D-gluconate[c] '''=>''' 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''+''' 1.0 H2O H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0110785]]
+
* Gene: [[B471_RS0109235]]
−
** [[pantograph]]-[[bsubtilis]]
+
** Source: [[orthology-aferrooxidans]]
−
* [[B471_RS0115580]]
+
−
** [[pantograph]]-[[bsubtilis]]
+
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
−
** '''43''' reactions found over '''182''' reactions in the full pathway
+
** '''20''' reactions found over '''69''' reactions in the full pathway
−
* [[map00071]]: [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071]
+
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
−
** '''17''' reactions found over '''167''' reactions in the full pathway
+
** '''51''' reactions found over '''220''' reactions in the full pathway
−
* [[map00062]]: [http://www.genome.jp/dbget-bin/www_bget?map00062 map00062]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
−
** '''11''' reactions found over '''111''' reactions in the full pathway
+
** '''101''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aferrooxidans]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 4.2.1.17
 
−
* BioCyc : META:RXN-12567
 
−
* MetaNetX (MNX) Equation : MNXR97886
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30547 30547]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17277 17277]
−
* Reactome : REACT_R-BTA-77325
+
* EC Number : 4.2.1.12
−
* KEGG Reaction : R04749
+
* MetaNetX (MNX) Equation : MNXR97898
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R02036
−
{{#set: common name=3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)}}
+
* BioCyc : META:PGLUCONDEHYDRAT-RXN
−
{{#set: gene associated=B471_RS0110785|B471_RS0115580}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map01100|map01212|map00071|map00062}}
+
{{#set: common name=6-phosphogluconate dehydratase}}
 +
{{#set: gene associated=B471_RS0109235}}
 +
{{#set: in pathway=map01100|map00030|map01200|map01120}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=bsubtilis}}
 

Latest revision as of 15:42, 21 March 2018

Reaction EDD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 6-phosphogluconate dehydratase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 6-Phospho-D-gluconate[c] => 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c] + 1.0 H2O H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.2.1.12
  • MetaNetX (MNX) Equation : MNXR97898
  • KEGG Reaction : R02036
  • BioCyc : META:PGLUCONDEHYDRAT-RXN




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