Difference between revisions of "TRDR"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADPT ADPT] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenine phosphoribosyltransferase * S...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TRDR TRDR] == * direction: ** LEFT-TO-RIGHT * common name: ** Thioredoxin reductase (NADPH) * Synon...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ADPT ADPT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TRDR TRDR] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Adenine phosphoribosyltransferase
+
** Thioredoxin reductase (NADPH)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[prpp]][c] '''+''' 1.0 [[ade]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[trdox]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[trdrd]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5-Phospho-alpha-D-ribose 1-diphosphate[c] '''+''' 1.0 Adenine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 Oxidized thioredoxin[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Reduced thioredoxin[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0102215]]
+
* Gene: [[B471_RS0117870]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
−
** [[pantograph]]-[[bsubtilis]]
+
** Source: [[orthology-bsubtilis]]
−
* [[B471_RS0107430]]
+
* Gene: [[B471_RS0117930]]
−
** [[pantograph]]-[[aferrooxidans]]
+
** Source: [[orthology-bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''6''' reactions found over '''35''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
+
−
** '''22''' reactions found over '''72''' reactions in the full pathway
+
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
−
** '''64''' reactions found over '''298''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.4.2.7
+
* EC Number : 1.6.4.5
−
* BioCyc : META:ADENPRIBOSYLTRAN-RXN
+
* MetaNetX (MNX) Equation : MNXR104766
−
* MetaNetX (MNX) Equation : MNXR95482
+
* KEGG Reaction : R02016
−
* RHEA:
+
* BioCyc : META:THIOREDOXIN-REDUCT-NADPH-RXN
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16609 16609]
+
−
* Reactome : REACT_R-ATH-74213
+
−
* KEGG Reaction : R00190
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Adenine phosphoribosyltransferase}}
+
{{#set: common name=Thioredoxin reductase (NADPH)}}
−
{{#set: gene associated=B471_RS0102215|B471_RS0107430}}
+
{{#set: gene associated=B471_RS0117870|B471_RS0117930}}
−
{{#set: in pathway=map01100|map01110|map00983|map00230}}
+
{{#set: in pathway=map00450}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
 

Latest revision as of 15:42, 21 March 2018

Reaction TRDR

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Thioredoxin reductase (NADPH)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Oxidized thioredoxin[c] + 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] => 1.0 Reduced thioredoxin[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.6.4.5
  • MetaNetX (MNX) Equation : MNXR104766
  • KEGG Reaction : R02016
  • BioCyc : META:THIOREDOXIN-REDUCT-NADPH-RXN




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