Difference between revisions of "PHETRS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ARGSL ARGSL] == * direction: ** REVERSIBLE * common name: ** Argininosuccinate lyase * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PHETRS PHETRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Phenylalanyl-tRNA synthetase * Sy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ARGSL ARGSL] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PHETRS PHETRS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Argininosuccinate lyase
+
** Phenylalanyl-tRNA synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[argsuc]][c] '''<=>''' 1.0 [[arg__L]][c] '''+''' 1.0 [[fum]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[trnaphe]][c] '''+''' 1.0 [[phe__L]][c] '''=>''' 1.0 [[phetrna]][c] '''+''' 1.0 [[amp]][c] '''+''' 1.0 [[ppi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 N(omega)-(L-Arginino)succinate[c] '''<=>''' 1.0 L-Arginine[c] '''+''' 1.0 Fumarate[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 TRNA(Phe)[c] '''+''' 1.0 L-Phenylalanine[c] '''=>''' 1.0 L-Phenylalanyl-tRNA(Phe)[c] '''+''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 Diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[B471_RS23380]]
 
−
** [[pantograph]]-[[cljungdahlii]]
 
−
** [[pantograph]]-[[bsubtilis]]
 
−
** [[pantograph]]-[[aferrooxidans]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
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** '''472''' reactions found over '''2349''' reactions in the full pathway
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** '''7''' reactions found over '''49''' reactions in the full pathway
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* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
+
−
** '''13''' reactions found over '''65''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''148''' reactions found over '''694''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
+
** Source: [[manual-reaction_to_add_delete]]
−
*** [[aferrooxidans]]
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
−
*** [[cljungdahlii]]
+
−
*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
−
* EC Number : 4.3.2.1
+
* Reactome : REACT_R-HSA-379848
−
* BioCyc : META:ARGSUCCINLYA-RXN
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* MetaNetX (MNX) Equation : MNXR102634
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* MetaNetX (MNX) Equation : MNXR95948
+
* KEGG Reaction : R03660
−
* RHEA:
+
* EC Number : 6.1.1.20
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24020 24020]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* Reactome : REACT_R-ATH-70573
+
{{#set: common name=Phenylalanyl-tRNA synthetase}}
−
* KEGG Reaction : R01086
+
{{#set: in pathway=map00970}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reconstruction category=manual}}
−
{{#set: common name=Argininosuccinate lyase}}
+
{{#set: reconstruction source=manual-reaction_to_add_delete}}
−
{{#set: gene associated=B471_RS23380}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
−
{{#set: in pathway=map01100|map00220|map01110|map01230|map00250|map01130}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
+

Latest revision as of 15:43, 21 March 2018

Reaction PHETRS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phenylalanyl-tRNA synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 TRNA(Phe)[c] + 1.0 L-Phenylalanine[c] => 1.0 L-Phenylalanyl-tRNA(Phe)[c] + 1.0 AMP C10H12N5O7P[c] + 1.0 Diphosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • Reactome : REACT_R-HSA-379848
  • MetaNetX (MNX) Equation : MNXR102634
  • KEGG Reaction : R03660
  • EC Number : 6.1.1.20




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