Difference between revisions of "RPE"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACGS ACGS] == * direction: ** LEFT-TO-RIGHT * common name: ** N-acetylglutamate synthase * Synonym(...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] == * direction: ** REVERSIBLE * common name: ** Ribulose 5-phosphate 3-epimerase * Synonym...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACGS ACGS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RPE RPE] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** N-acetylglutamate synthase
+
** Ribulose 5-phosphate 3-epimerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[accoa]][c] '''+''' 1.0 [[glu__L]][c] '''=>''' 1.0 [[coa]][c] '''+''' 1.0 [[acglu]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[ru5p__D]][c] '''<=>''' 1.0 [[xu5p__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Acetyl-CoA[c] '''+''' 1.0 L-Glutamate[c] '''=>''' 1.0 Coenzyme A[c] '''+''' 1.0 N-Acetyl-L-glutamate[c] '''+''' 1.0 H+[c]
+
** 1.0 D-Ribulose 5-phosphate[c] '''<=>''' 1.0 D-Xylulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS21960]]
+
* Gene: [[B471_RS23765]]
−
** [[pantograph]]-[[aferrooxidans]]
+
** Source: [[orthology-cljungdahlii]]
−
* [[B471_RS0117540]]
+
** Source: [[orthology-bsubtilis]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-aferrooxidans]]
−
** [[pantograph]]-[[bsubtilis]]
+
−
* [[B471_RS23385]]
+
−
** [[pantograph]]-[[aferrooxidans]]
+
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
+
−
** '''13''' reactions found over '''65''' reactions in the full pathway
+
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
−
** '''26''' reactions found over '''80''' reactions in the full pathway
+
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
 +
** '''6''' reactions found over '''54''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''18''' reactions found over '''71''' reactions in the full pathway
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
** '''78''' reactions found over '''228''' reactions in the full pathway
 
** '''78''' reactions found over '''228''' reactions in the full pathway
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''20''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.3.1.1
+
* EC Number : 5.1.3.1
−
* BioCyc : META:N-ACETYLTRANSFER-RXN
+
* BioCyc : META:RIBULP3EPIM-RXN
−
* MetaNetX (MNX) Equation : MNXR95259
+
* MetaNetX (MNX) Equation : MNXR104083
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24292 24292]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
−
* Reactome : REACT_R-BTA-70542
+
* Reactome : REACT_R-ATH-199803
−
* KEGG Reaction : R00259
+
* KEGG Reaction : R01529
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=N-acetylglutamate synthase}}
+
{{#set: common name=Ribulose 5-phosphate 3-epimerase}}
−
{{#set: gene associated=B471_RS21960|B471_RS0117540|B471_RS23385}}
+
{{#set: gene associated=B471_RS23765}}
−
{{#set: in pathway=map01100|map00220|map01110|map01210|map01230|map01130}}
+
{{#set: in pathway=map01100|map01110|map01120|map00040|map01200|map00710|map01230|map01130|map00030}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
 

Latest revision as of 15:43, 21 March 2018

Reaction RPE

  • direction:
    • REVERSIBLE
  • common name:
    • Ribulose 5-phosphate 3-epimerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Ribulose 5-phosphate[c] <=> 1.0 D-Xylulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 5.1.3.1
  • BioCyc : META:RIBULP3EPIM-RXN
  • MetaNetX (MNX) Equation : MNXR104083
  • RHEA:
  • Reactome : REACT_R-ATH-199803
  • KEGG Reaction : R01529




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