Difference between revisions of "BIOMASS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EX_his__L EX_his__L] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/BIOMASS BIOMASS] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With iden...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/EX_his__L EX_his__L] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/BIOMASS BIOMASS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 7: Line 7:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[his__L]][e] '''=>'''  
+
** 4.5e-05 [[nadh]][c] '''+''' 0.000677 [[mn2]][c] '''+''' 0.257282 [[lys__L]][c] '''+''' 5.5e-05 [[udcpdp]][c] '''+''' 0.000333 [[zn2]][c] '''+''' 0.012745 [[nh4]][c] '''+''' 0.000279 [[accoa]][c] '''+''' 0.000223 [[adocbl]][c] '''+''' 7e-06 [[mobd]][c] '''+''' 0.000223 [[chor]][c] '''+''' 0.221767 [[arg__L]][c] '''+''' 0.071028 [[his__L]][c] '''+''' 0.459319 [[gly]][c] '''+''' 0.337781 [[leu__L]][c] '''+''' 2e-06 [[btn]][c] '''+''' 0.00707 [[pe181]][c] '''+''' 0.040045 [[pe140]][c] '''+''' 0.00961 [[pg140]][c] '''+''' 0.013822 [[fe2]][c] '''+''' 0.004248 [[so4]][c] '''+''' 0.065225 [[gtp]][c] '''+''' 0.029005 [[pg160]][c] '''+''' 0.1389 [[phe__L]][c] '''+''' 0.006538 [[murein4px4p]][e] '''+''' 0.180728 [[asn__L]][c] '''+''' 0.042474 [[pg161]][c] '''+''' 0.180728 [[asp__L]][c] '''+''' 0.385133 [[ala__L]][c] '''+''' 0.005098 [[ca2]][c] '''+''' 0.000316 [[ni2]][c] '''+''' 0.190199 [[thr__L]][c] '''+''' 0.161787 [[ser__L]][c] '''+''' 0.120861 [[pe160]][c] '''+''' 0.317261 [[val__L]][c] '''+''' 0.000807 [[murein4px4px4p]][e] '''+''' 0.191179 [[k]][c] '''+''' 0.005098 [[cl]][c] '''+''' 0.000112 [[nadp]][c] '''+''' 46.719016 [[atp]][c] '''+''' 0.197302 [[glu__L]][c] '''+''' 0.040484 [[ctp]][c] '''+''' 0.115224 [[met__L]][c] '''+''' 0.002669 [[clpn140]][c] '''+''' 0.000223 [[5mthf]][c] '''+''' 2e-05 [[pheme]][c] '''+''' 0.013104 [[dctp]][c] '''+''' 0.000335 [[nadph]][c] '''+''' 0.029167 [[dttp]][c] '''+''' 0.000223 [[thf]][c] '''+''' 0.000223 [[fad]][c] '''+''' 0.015433 [[teca_CL]][c] '''+''' 0.000223 [[thmpp]][c] '''+''' 0.001696 [[pg181]][c] '''+''' 0.165733 [[pro__L]][c] '''+''' 0.068661 [[cys__L]][c] '''+''' 0.176979 [[pe161]][c] '''+''' 2.5e-05 [[cobalt2]][c] '''+''' 0.000223 [[10fthf]][c] '''+''' 0.000223 [[amet]][c] '''+''' 0.001787 [[nad]][c] '''+''' 0.006457 [[murein4p4p]][e] '''+''' 0.103386 [[tyr__L]][c] '''+''' 0.000471 [[clpn181]][c] '''+''' 0.029167 [[datp]][c] '''+''' 0.013104 [[dgtp]][c] '''+''' 0.217821 [[ile__L]][c] '''+''' 0.000223 [[pydx5p]][c] '''+''' 3.1e-05 [[malcoa]][c] '''+''' 0.197302 [[gln__L]][c] '''+''' 2e-05 [[sheme]][c] '''+''' 42.656029 [[h2o]][c] '''+''' 0.042617 [[trp__L]][c] '''+''' 0.008057 [[clpn160]][c] '''+''' 0.011798 [[clpn161]][c] '''+''' 0.000223 [[mlthf]][c] '''+''' 2e-05 [[hemeO]][c] '''+''' 0.000694 [[cu2]][c] '''+''' 0.043698 [[utp]][c] '''+''' 0.000223 [[ribflv]][c] '''+''' 0.008496 [[mg2]][c] '''=>''' 46.666 [[adp]][c] '''+''' 46.661751 [[pi]][c] '''+''' 46.666 [[h]][c] '''+''' 0.286968 [[ppi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Histidine[e] '''=>'''  
+
** 4.5e-05 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 0.000677 Manganese[c] '''+''' 0.257282 L-Lysine[c] '''+''' 5.5e-05 Undecaprenyl diphosphate[c] '''+''' 0.000333 Zinc[c] '''+''' 0.012745 Ammonium[c] '''+''' 0.000279 Acetyl-CoA[c] '''+''' 0.000223 Adenosylcobalamin[c] '''+''' 7e-06 Molybdate[c] '''+''' 0.000223 Chorismate[c] '''+''' 0.221767 L-Arginine[c] '''+''' 0.071028 L-Histidine[c] '''+''' 0.459319 Glycine[c] '''+''' 0.337781 L-Leucine[c] '''+''' 2e-06 Biotin[c] '''+''' 0.00707 Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)[c] '''+''' 0.040045 Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)[c] '''+''' 0.00961 Phosphatidylglycerol (ditetradecanoyl, n-C14:0)[c] '''+''' 0.013822 Fe2+ mitochondria[c] '''+''' 0.004248 Sulfate[c] '''+''' 0.065225 GTP C10H12N5O14P3[c] '''+''' 0.029005 Phosphatidylglycerol (dihexadecanoyl, n-C16:0)[c] '''+''' 0.1389 L-Phenylalanine[c] '''+''' 0.006538 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[e] '''+''' 0.180728 L-Asparagine[c] '''+''' 0.042474 Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)[c] '''+''' 0.180728 L-Aspartate[c] '''+''' 0.385133 L-Alanine[c] '''+''' 0.005098 Calcium[c] '''+''' 0.000316 Nickel[c] '''+''' 0.190199 L-Threonine[c] '''+''' 0.161787 L-Serine[c] '''+''' 0.120861 Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)[c] '''+''' 0.317261 L-Valine[c] '''+''' 0.000807 Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[e] '''+''' 0.191179 Potassium[c] '''+''' 0.005098 Chloride[c] '''+''' 0.000112 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 46.719016 ATP C10H12N5O13P3[c] '''+''' 0.197302 L-Glutamate[c] '''+''' 0.040484 CTP C9H12N3O14P3[c] '''+''' 0.115224 L-Methionine[c] '''+''' 0.002669 Cardiolipin (tetratetradecanoyl, n-C14:0)[c] '''+''' 0.000223 5-Methyltetrahydrofolate[c] '''+''' 2e-05 Protoheme C34H30FeN4O4[c] '''+''' 0.013104 DCTP C9H12N3O13P3[c] '''+''' 0.000335 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 0.029167 DTTP C10H13N2O14P3[c] '''+''' 0.000223 5,6,7,8-Tetrahydrofolate[c] '''+''' 0.000223 Flavin adenine dinucleotide oxidized[c] '''+''' 0.015433 Glycerol teichoic acid (n=25), unlinked, D-ala (specific CL)[c] '''+''' 0.000223 Thiamine diphosphate[c] '''+''' 0.001696 Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)[c] '''+''' 0.165733 L-Proline[c] '''+''' 0.068661 L-Cysteine[c] '''+''' 0.176979 Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)[c] '''+''' 2.5e-05 Co2+[c] '''+''' 0.000223 10-Formyltetrahydrofolate[c] '''+''' 0.000223 S-Adenosyl-L-methionine[c] '''+''' 0.001787 Nicotinamide adenine dinucleotide[c] '''+''' 0.006457 Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)[e] '''+''' 0.103386 L-Tyrosine[c] '''+''' 0.000471 Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)[c] '''+''' 0.029167 DATP C10H12N5O12P3[c] '''+''' 0.013104 DGTP C10H12N5O13P3[c] '''+''' 0.217821 L-Isoleucine[c] '''+''' 0.000223 Pyridoxal 5'-phosphate[c] '''+''' 3.1e-05 Malonyl CoA C24H33N7O19P3S[c] '''+''' 0.197302 L-Glutamine[c] '''+''' 2e-05 Siroheme C42H36FeN4O16[c] '''+''' 42.656029 H2O H2O[c] '''+''' 0.042617 L-Tryptophan[c] '''+''' 0.008057 Cardiolipin (tetrahexadecanoyl, n-C16:0)[c] '''+''' 0.011798 Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)[c] '''+''' 0.000223 5,10-Methylenetetrahydrofolate[c] '''+''' 2e-05 Heme O C49H56FeN4O5[c] '''+''' 0.000694 Copper[c] '''+''' 0.043698 UTP C9H11N2O15P3[c] '''+''' 0.000223 Riboflavin C17H20N4O6[c] '''+''' 0.008496 Magnesium[c] '''=>''' 46.666 ADP C10H12N5O10P2[c] '''+''' 46.661751 Phosphate[c] '''+''' 46.666 H+[c] '''+''' 0.286968 Diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[manual]]
−
** [[reaction from orthology templates not found by pantograph]]
+
** Source: [[manual-missing_rxn_creator]]
 +
*** Comment: [[reaction from orthology templates not found by pantograph]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=manual}}
 
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction source=reaction from orthology templates not found by pantograph}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
 +
{{#set: reconstruction comment=reaction from orthology templates not found by pantograph}}

Latest revision as of 15:44, 21 March 2018

Reaction BIOMASS

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 4.5e-05 Nicotinamide adenine dinucleotide - reduced[c] + 0.000677 Manganese[c] + 0.257282 L-Lysine[c] + 5.5e-05 Undecaprenyl diphosphate[c] + 0.000333 Zinc[c] + 0.012745 Ammonium[c] + 0.000279 Acetyl-CoA[c] + 0.000223 Adenosylcobalamin[c] + 7e-06 Molybdate[c] + 0.000223 Chorismate[c] + 0.221767 L-Arginine[c] + 0.071028 L-Histidine[c] + 0.459319 Glycine[c] + 0.337781 L-Leucine[c] + 2e-06 Biotin[c] + 0.00707 Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)[c] + 0.040045 Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)[c] + 0.00961 Phosphatidylglycerol (ditetradecanoyl, n-C14:0)[c] + 0.013822 Fe2+ mitochondria[c] + 0.004248 Sulfate[c] + 0.065225 GTP C10H12N5O14P3[c] + 0.029005 Phosphatidylglycerol (dihexadecanoyl, n-C16:0)[c] + 0.1389 L-Phenylalanine[c] + 0.006538 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[e] + 0.180728 L-Asparagine[c] + 0.042474 Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)[c] + 0.180728 L-Aspartate[c] + 0.385133 L-Alanine[c] + 0.005098 Calcium[c] + 0.000316 Nickel[c] + 0.190199 L-Threonine[c] + 0.161787 L-Serine[c] + 0.120861 Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)[c] + 0.317261 L-Valine[c] + 0.000807 Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[e] + 0.191179 Potassium[c] + 0.005098 Chloride[c] + 0.000112 Nicotinamide adenine dinucleotide phosphate[c] + 46.719016 ATP C10H12N5O13P3[c] + 0.197302 L-Glutamate[c] + 0.040484 CTP C9H12N3O14P3[c] + 0.115224 L-Methionine[c] + 0.002669 Cardiolipin (tetratetradecanoyl, n-C14:0)[c] + 0.000223 5-Methyltetrahydrofolate[c] + 2e-05 Protoheme C34H30FeN4O4[c] + 0.013104 DCTP C9H12N3O13P3[c] + 0.000335 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 0.029167 DTTP C10H13N2O14P3[c] + 0.000223 5,6,7,8-Tetrahydrofolate[c] + 0.000223 Flavin adenine dinucleotide oxidized[c] + 0.015433 Glycerol teichoic acid (n=25), unlinked, D-ala (specific CL)[c] + 0.000223 Thiamine diphosphate[c] + 0.001696 Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)[c] + 0.165733 L-Proline[c] + 0.068661 L-Cysteine[c] + 0.176979 Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)[c] + 2.5e-05 Co2+[c] + 0.000223 10-Formyltetrahydrofolate[c] + 0.000223 S-Adenosyl-L-methionine[c] + 0.001787 Nicotinamide adenine dinucleotide[c] + 0.006457 Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)[e] + 0.103386 L-Tyrosine[c] + 0.000471 Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)[c] + 0.029167 DATP C10H12N5O12P3[c] + 0.013104 DGTP C10H12N5O13P3[c] + 0.217821 L-Isoleucine[c] + 0.000223 Pyridoxal 5'-phosphate[c] + 3.1e-05 Malonyl CoA C24H33N7O19P3S[c] + 0.197302 L-Glutamine[c] + 2e-05 Siroheme C42H36FeN4O16[c] + 42.656029 H2O H2O[c] + 0.042617 L-Tryptophan[c] + 0.008057 Cardiolipin (tetrahexadecanoyl, n-C16:0)[c] + 0.011798 Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)[c] + 0.000223 5,10-Methylenetetrahydrofolate[c] + 2e-05 Heme O C49H56FeN4O5[c] + 0.000694 Copper[c] + 0.043698 UTP C9H11N2O15P3[c] + 0.000223 Riboflavin C17H20N4O6[c] + 0.008496 Magnesium[c] => 46.666 ADP C10H12N5O10P2[c] + 46.661751 Phosphate[c] + 46.666 H+[c] + 0.286968 Diphosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=BIOMASS&oldid=8109"