Difference between revisions of "FBA"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PNTK PNTK] == * direction: ** LEFT-TO-RIGHT * common name: ** Pantothenate kinase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FBA FBA] == * direction: ** REVERSIBLE * common name: ** Fructose-bisphosphate aldolase * Synonym(s...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PNTK PNTK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/FBA FBA] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Pantothenate kinase
+
** Fructose-bisphosphate aldolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pnto__R]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[4ppan]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[fdp]][c] '''<=>''' 1.0 [[dhap]][c] '''+''' 1.0 [[g3p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 (R)-Pantothenate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 D-4'-Phosphopantothenate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c]
+
** 1.0 D-Fructose 1,6-bisphosphate[c] '''<=>''' 1.0 Dihydroxyacetone phosphate[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0107805]]
+
* Gene: [[B471_RS0118210]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-aferrooxidans]]
 +
* Gene: [[B471_RS0101615]]
 +
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''20''' reactions found over '''75''' reactions in the full pathway
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
 +
** '''11''' reactions found over '''63''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''18''' reactions found over '''71''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''14''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''20''' reactions found over '''149''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''20''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[cljungdahlii]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.7.1.33
 
−
* BioCyc : META:PANTOTHENATE-KIN-RXN
 
−
* MetaNetX (MNX) Equation : MNXR103050
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16373 16373]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14729 14729]
−
* Reactome : REACT_R-BTA-196857
+
* MetaNetX (MNX) Equation : MNXR99459
−
* KEGG Reaction : R03018
+
* KEGG Reaction : R01068
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* EC Number : 4.1.2.13
−
{{#set: common name=Pantothenate kinase}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=B471_RS0107805}}
+
{{#set: common name=Fructose-bisphosphate aldolase}}
−
{{#set: in pathway=map01100|map00770}}
+
{{#set: gene associated=B471_RS0118210|B471_RS0101615}}
 +
{{#set: in pathway=map01100|map01110|map01120|map01200|map00051|map00710|map00680|map00010|map01130|map00030}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=cljungdahlii}}
 

Latest revision as of 15:46, 21 March 2018

Reaction FBA

  • direction:
    • REVERSIBLE
  • common name:
    • Fructose-bisphosphate aldolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Fructose 1,6-bisphosphate[c] <=> 1.0 Dihydroxyacetone phosphate[c] + 1.0 Glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR99459
  • KEGG Reaction : R01068
  • EC Number : 4.1.2.13




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