Difference between revisions of "PYDXNK"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine synthase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PYDXNK PYDXNK] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxine kinase * Synonym(s):...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PYDXNK PYDXNK] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Spermidine synthase
+
** Pyridoxine kinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ametam]][c] '''+''' 1.0 [[ptrc]][c] '''=>''' 1.0 [[spmd]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[5mta]][c]
+
** 1.0 [[pydxn]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[pdx5p]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 S-Adenosylmethioninamine[c] '''+''' 1.0 Putrescine[c] '''=>''' 1.0 Spermidine[c] '''+''' 1.0 H+[c] '''+''' 1.0 5-Methylthioadenosine[c]
+
** 1.0 Pyridoxine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Pyridoxine 5'-phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[B471_RS0113665]]
 
−
** [[pantograph]]-[[cljungdahlii]]
 
−
** [[pantograph]]-[[bsubtilis]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
* [[map00750]]: [http://www.genome.jp/dbget-bin/www_bget?map00750 map00750]
−
** '''24''' reactions found over '''135''' reactions in the full pathway
+
** '''6''' reactions found over '''25''' reactions in the full pathway
−
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
+
−
** '''10''' reactions found over '''39''' reactions in the full pathway
+
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
+
−
** '''19''' reactions found over '''149''' reactions in the full pathway
+
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
+
−
** '''9''' reactions found over '''91''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
+
** Source: [[manual-reaction_to_add_delete]]
−
*** [[cljungdahlii]]
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
−
*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
 +
* EC Number : 2.7.1.35
 +
* BioCyc : META:PNKIN-RXN
 +
* MetaNetX (MNX) Equation : MNXR103362
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25108 25108]
−
* BioCyc : META:SPERMIDINESYN-RXN
+
* Reactome : REACT_R-ATH-964962
−
* MetaNetX (MNX) Equation : MNXR95860
+
* KEGG Reaction : R01909
−
* KEGG Reaction : R01920
+
−
* EC Number : 2.5.1.16
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Spermidine synthase}}
+
{{#set: common name=Pyridoxine kinase}}
−
{{#set: gene associated=B471_RS0113665}}
+
{{#set: in pathway=map01100|map00750}}
−
{{#set: in pathway=map01100|map00270|map00480|map00330|map00410}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-reaction_to_add_delete}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
−
{{#set: reconstruction source=cljungdahlii|bsubtilis}}
+

Latest revision as of 15:46, 21 March 2018

Reaction PYDXNK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyridoxine kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Pyridoxine[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 Pyridoxine 5'-phosphate[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • EC Number : 2.7.1.35
  • BioCyc : META:PNKIN-RXN
  • MetaNetX (MNX) Equation : MNXR103362
  • RHEA:
  • Reactome : REACT_R-ATH-964962
  • KEGG Reaction : R01909




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