Difference between revisions of "SPMS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGK PGK] == * direction: ** REVERSIBLE * common name: ** Phosphoglycerate kinase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine synthase * Synonym(s): ==...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGK PGK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoglycerate kinase
+
** Spermidine synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[3pg]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[13dpg]][c]
+
** 1.0 [[ptrc]][c] '''+''' 1.0 [[ametam]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[5mta]][c] '''+''' 1.0 [[spmd]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 3-Phospho-D-glycerate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 3-Phospho-D-glyceroyl phosphate[c]
+
** 1.0 Putrescine[c] '''+''' 1.0 S-Adenosylmethioninamine[c] '''=>''' 1.0 H+[c] '''+''' 1.0 5-Methylthioadenosine[c] '''+''' 1.0 Spermidine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0119325]]
+
* Gene: [[B471_RS0113665]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
−
** [[pantograph]]-[[aferrooxidans]]
+
** Source: [[orthology-bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
** '''24''' reactions found over '''135''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
** '''10''' reactions found over '''39''' reactions in the full pathway
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
−
** '''51''' reactions found over '''220''' reactions in the full pathway
+
** '''19''' reactions found over '''149''' reactions in the full pathway
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
** '''9''' reactions found over '''91''' reactions in the full pathway
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
+
−
** '''20''' reactions found over '''149''' reactions in the full pathway
+
−
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
+
−
** '''18''' reactions found over '''71''' reactions in the full pathway
+
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''148''' reactions found over '''694''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.7.2.3
 
−
* BioCyc : META:PHOSGLYPHOS-RXN
 
−
* MetaNetX (MNX) Equation : MNXR102538
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14801 14801]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
−
* Reactome : REACT_R-ATH-70486
+
* EC Number : 2.5.1.16
−
* KEGG Reaction : R01512
+
* MetaNetX (MNX) Equation : MNXR95860
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R01920
−
{{#set: common name=Phosphoglycerate kinase}}
+
* BioCyc : META:SPERMIDINESYN-RXN
−
{{#set: gene associated=B471_RS0119325}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map01100|map01110|map01120|map01200|map01230|map00010|map00710|map01130}}
+
{{#set: common name=Spermidine synthase}}
 +
{{#set: gene associated=B471_RS0113665}}
 +
{{#set: in pathway=map01100|map00270|map00480|map00330|map00410}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii}}
 

Latest revision as of 15:47, 21 March 2018

Reaction SPMS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Spermidine synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Putrescine[c] + 1.0 S-Adenosylmethioninamine[c] => 1.0 H+[c] + 1.0 5-Methylthioadenosine[c] + 1.0 Spermidine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.5.1.16
  • MetaNetX (MNX) Equation : MNXR95860
  • KEGG Reaction : R01920
  • BioCyc : META:SPERMIDINESYN-RXN




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